Variant report

Variant	rs74125826
Chromosome Location	chr1:172936321-172936322
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10912522	1.00[AMR][1000 genomes]
rs12066784	1.00[AMR][1000 genomes]
rs12073776	1.00[AMR][1000 genomes]
rs12079981	1.00[AMR][1000 genomes]
rs55936451	1.00[AMR][1000 genomes]
rs56089878	1.00[AMR][1000 genomes]
rs57008526	1.00[AMR][1000 genomes]
rs57256775	1.00[AMR][1000 genomes]
rs57931692	1.00[AMR][1000 genomes]
rs59267044	1.00[AMR][1000 genomes]
rs60158523	1.00[AMR][1000 genomes]
rs60825363	1.00[AMR][1000 genomes]
rs6425209	1.00[AMR][1000 genomes]
rs74125829	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74125830	0.92[AFR][1000 genomes]
rs74126792	1.00[AMR][1000 genomes]
rs74126798	1.00[AMR][1000 genomes]
rs74129514	1.00[AMR][1000 genomes]
rs74129516	1.00[AMR][1000 genomes]
rs74129520	1.00[AMR][1000 genomes]
rs74129521	1.00[AMR][1000 genomes]
rs74129522	1.00[AMR][1000 genomes]
rs74129523	1.00[AMR][1000 genomes]
rs74129525	1.00[AMR][1000 genomes]
rs74129526	1.00[AMR][1000 genomes]
rs74129527	1.00[AMR][1000 genomes]
rs74129528	1.00[AMR][1000 genomes]
rs74129529	1.00[AMR][1000 genomes]
rs74129530	1.00[AMR][1000 genomes]
rs74129531	1.00[AMR][1000 genomes]
rs74129534	1.00[AMR][1000 genomes]
rs74129538	1.00[AMR][1000 genomes]
rs74129543	1.00[AMR][1000 genomes]
rs973185	1.00[AMR][1000 genomes]
rs980003	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831904	chr1:172912110-173070429	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172929800-172938200	Weak transcription	HSMMtube	muscle
2	chr1:172930000-172937200	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr1:172933800-172936400	Weak transcription	NHDF-Ad	bronchial
4	chr1:172935400-172937400	Enhancers	HUVEC	blood vessel
5	chr1:172935400-172938000	Enhancers	HMEC	breast
6	chr1:172935800-172937600	Enhancers	NH-A	brain
7	chr1:172935800-172937600	Enhancers	NHEK	skin
8	chr1:172935800-172938800	Enhancers	A549	lung
9	chr1:172935800-172939800	Enhancers	NHLF	lung
10	chr1:172935800-172940600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr1:172935800-172940600	Enhancers	HSMM	muscle
12	chr1:172936000-172936800	Enhancers	Hela-S3	cervix
13	chr1:172936000-172937400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr1:172936000-172937400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr1:172936000-172937400	Enhancers	Osteobl	bone
16	chr1:172936000-172937600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr1:172936000-172938000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr1:172936000-172941200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr1:172936200-172944800	Weak transcription	Stomach Mucosa	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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