Variant report

Variant	rs4501329
Chromosome Location	chr5:152023711-152023712
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs2961754	0.87[AMR][1000 genomes]
rs2961758	1.00[EUR][1000 genomes]
rs2964232	1.00[EUR][1000 genomes]
rs2964250	1.00[EUR][1000 genomes]
rs2964257	1.00[EUR][1000 genomes]
rs2974555	1.00[EUR][1000 genomes]
rs2974557	1.00[EUR][1000 genomes]
rs35155607	1.00[EUR][1000 genomes]
rs6875946	1.00[EUR][1000 genomes]
rs7723946	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023676	chr5:151979253-152925064	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv537927	chr5:151979253-152925064	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv5074	chr5:152010691-152055779	Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:152015000-152024000	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr5:152021000-152024200	Enhancers	Fetal Brain Male	brain
3	chr5:152021800-152023800	Weak transcription	Fetal Brain Female	brain
4	chr5:152022000-152024400	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
5	chr5:152022200-152024400	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
6	chr5:152022200-152029400	Weak transcription	Aorta	Aorta
7	chr5:152022400-152023800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr5:152022400-152024600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr5:152022600-152024400	Enhancers	Fetal Kidney	kidney
10	chr5:152022800-152023800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr5:152023000-152024000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr5:152023000-152024000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr5:152023000-152024200	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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