Variant report
| Variant | rs7723946 |
|---|---|
| Chromosome Location | chr5:152097985-152097986 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs11167588 | 1.00[AMR][1000 genomes] |
| rs2961758 | 1.00[EUR][1000 genomes] |
| rs2964232 | 1.00[EUR][1000 genomes] |
| rs2964250 | 1.00[EUR][1000 genomes] |
| rs2964257 | 1.00[EUR][1000 genomes] |
| rs2974555 | 1.00[EUR][1000 genomes] |
| rs2974557 | 1.00[EUR][1000 genomes] |
| rs4501329 | 1.00[EUR][1000 genomes] |
| rs57238654 | 1.00[AMR][1000 genomes] |
| rs59533971 | 1.00[AMR][1000 genomes] |
| rs60145996 | 1.00[AMR][1000 genomes] |
| rs60999611 | 1.00[AMR][1000 genomes] |
| rs6875946 | 1.00[EUR][1000 genomes] |
| rs73272368 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73272372 | 1.00[AMR][1000 genomes] |
| rs73272373 | 1.00[AMR][1000 genomes] |
| rs73272377 | 1.00[AMR][1000 genomes] |
| rs73272380 | 1.00[AMR][1000 genomes] |
| rs73272382 | 1.00[AMR][1000 genomes] |
| rs73272385 | 1.00[AMR][1000 genomes] |
| rs73272388 | 1.00[AMR][1000 genomes] |
| rs73274581 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1023676 | chr5:151979253-152925064 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| 2 | nsv537927 | chr5:151979253-152925064 | Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:152097800-152098000 | Weak transcription | H9 Derived Neuron Cultured Cells | ES cell derived |
