Variant report

Variant	rs57238654
Chromosome Location	chr5:152149216-152149217
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11167588	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11167589	0.91[AFR][1000 genomes]
rs4132712	0.96[AFR][1000 genomes]
rs59533971	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60145996	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60999611	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73272368	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73272372	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73272373	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73272377	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73272380	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73272382	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73272385	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73272388	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73274581	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73274591	1.00[AFR][1000 genomes]
rs7723946	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023676	chr5:151979253-152925064	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv537927	chr5:151979253-152925064	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:152149200-152150200	Enhancers	Brain Germinal Matrix	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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