Variant report

Variant	rs11167589
Chromosome Location	chr5:152098705-152098706
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs11167588	0.94[AFR][1000 genomes]
rs11167597	0.96[EUR][1000 genomes]
rs17455800	0.88[ASN][1000 genomes]
rs17565470	0.82[ASN][1000 genomes]
rs17565505	0.88[ASN][1000 genomes]
rs17565693	0.89[CEU][hapmap];0.88[ASN][1000 genomes]
rs17565727	0.87[EUR][1000 genomes]
rs17565839	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3890802	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4132712	0.91[AFR][1000 genomes]
rs4484413	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4958573	0.88[EUR][1000 genomes]
rs4958574	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56047721	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57238654	0.91[AFR][1000 genomes]
rs59533971	0.88[AFR][1000 genomes]
rs60145996	0.93[AFR][1000 genomes]
rs60999611	0.89[AFR][1000 genomes]
rs72799126	0.86[EUR][1000 genomes]
rs72799142	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72799143	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72799145	1.00[ASN][1000 genomes]
rs72799172	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72799173	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72799176	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72799185	0.82[EUR][1000 genomes]
rs72799186	0.83[EUR][1000 genomes]
rs73272368	0.81[AFR][1000 genomes]
rs73272372	0.94[AFR][1000 genomes]
rs73272373	0.94[AFR][1000 genomes]
rs73272377	0.93[AFR][1000 genomes]
rs73272380	0.94[AFR][1000 genomes]
rs73272382	0.94[AFR][1000 genomes]
rs73272385	0.94[AFR][1000 genomes]
rs73272388	0.94[AFR][1000 genomes]
rs73274581	0.93[AFR][1000 genomes]
rs73274591	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023676	chr5:151979253-152925064	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv537927	chr5:151979253-152925064	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:152098000-152099000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr5:152098400-152098800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr5:152098400-152099000	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr5:152098600-152098800	Enhancers	Brain Substantia Nigra	brain

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