Variant report

Variant	rs72799173
Chromosome Location	chr5:152149398-152149399
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11167589	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11167597	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17455800	0.83[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs17565365	0.83[AFR][1000 genomes]
rs17565470	0.83[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs17565505	0.83[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs17565693	0.83[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs17565727	0.83[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs17565839	0.83[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3890802	0.83[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4484413	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4958573	0.83[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs4958574	0.83[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55829928	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs56047721	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56269251	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs72799113	0.83[AFR][1000 genomes]
rs72799126	0.83[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs72799142	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72799143	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72799145	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72799172	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72799176	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72799185	0.86[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs72799186	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72799196	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs72799198	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs72799200	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs72799201	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs72799202	0.84[AMR][1000 genomes]
rs72801007	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023676	chr5:151979253-152925064	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv537927	chr5:151979253-152925064	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:152149200-152150200	Enhancers	Brain Germinal Matrix	brain

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