Variant report
| Variant | rs11167597 |
|---|---|
| Chromosome Location | chr5:152155205-152155206 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs11167589 | 0.96[EUR][1000 genomes] |
| rs12153328 | 1.00[ASN][1000 genomes] |
| rs12188960 | 1.00[ASN][1000 genomes] |
| rs17488630 | 1.00[ASN][1000 genomes] |
| rs17565693 | 0.95[CEU][hapmap] |
| rs17565727 | 0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17565839 | 0.84[EUR][1000 genomes] |
| rs3890802 | 0.82[EUR][1000 genomes] |
| rs4484413 | 0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs4958573 | 0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4958574 | 0.84[EUR][1000 genomes] |
| rs55992747 | 1.00[ASN][1000 genomes] |
| rs56047721 | 0.84[EUR][1000 genomes] |
| rs72799126 | 0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72799142 | 0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72799143 | 0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs72799172 | 0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs72799173 | 0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs72799176 | 0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs72799185 | 0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72799186 | 0.82[EUR][1000 genomes] |
| rs72802868 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1023676 | chr5:151979253-152925064 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| 2 | nsv537927 | chr5:151979253-152925064 | Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:152154400-152155400 | Enhancers | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
