Variant report

Variant	rs72802868
Chromosome Location	chr5:152235215-152235216
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10056647	0.80[EUR][1000 genomes]
rs11167597	1.00[ASN][1000 genomes]
rs11167604	0.81[EUR][1000 genomes]
rs12153071	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12153328	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12186623	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12188960	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12654450	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13187261	0.81[EUR][1000 genomes]
rs17488630	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17489682	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17565727	1.00[ASN][1000 genomes]
rs4310018	0.81[EUR][1000 genomes]
rs4394168	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4437425	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4958573	1.00[ASN][1000 genomes]
rs55829928	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs55992747	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56117655	0.81[AMR][1000 genomes]
rs56269251	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72799126	1.00[ASN][1000 genomes]
rs72799142	1.00[ASN][1000 genomes]
rs72799185	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72799186	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72799196	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72799198	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72799200	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72799201	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72799202	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72801007	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72802852	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72802853	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72802874	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72802883	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72804778	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72804786	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72804798	0.81[AMR][1000 genomes]
rs72804800	0.80[AMR][1000 genomes]
rs72804801	0.80[AMR][1000 genomes]
rs7702105	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7702551	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023676	chr5:151979253-152925064	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv537927	chr5:151979253-152925064	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv883049	chr5:152159184-152399894	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv600089	chr5:152200109-152488891	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1017812	chr5:152220845-152467431	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv537928	chr5:152220845-152467431	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:152233000-152235400	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr5:152233000-152236200	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr5:152233200-152235600	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr5:152233200-152235800	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr5:152233400-152235800	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr5:152234000-152236400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr5:152234200-152236000	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr5:152235200-152235800	Enhancers	Stomach Mucosa	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links