Variant report

Variant	rs4506035
Chromosome Location	chr6:45249228-45249229
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10948222	0.93[EUR][1000 genomes]
rs12199720	0.84[EUR][1000 genomes]
rs12205312	0.83[EUR][1000 genomes]
rs1321081	0.80[EUR][1000 genomes]
rs2093901	0.81[EUR][1000 genomes]
rs2093903	0.81[EUR][1000 genomes]
rs2396425	0.83[EUR][1000 genomes]
rs3749863	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3923353	0.89[EUR][1000 genomes]
rs4373351	0.85[EUR][1000 genomes]
rs4446571	0.89[EUR][1000 genomes]
rs4510673	0.80[EUR][1000 genomes]
rs4631280	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6458428	0.82[EUR][1000 genomes]
rs6458441	0.82[EUR][1000 genomes]
rs6934594	0.84[EUR][1000 genomes]
rs6935398	0.89[EUR][1000 genomes]
rs6937317	0.87[EUR][1000 genomes]
rs7451423	0.93[EUR][1000 genomes]
rs7740083	0.85[EUR][1000 genomes]
rs7770401	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9296453	0.90[EUR][1000 genomes]
rs9296457	0.85[EUR][1000 genomes]
rs9349315	0.83[EUR][1000 genomes]
rs9357478	0.82[EUR][1000 genomes]
rs9357480	0.88[EUR][1000 genomes]
rs9357484	0.89[EUR][1000 genomes]
rs9369552	0.90[EUR][1000 genomes]
rs9369558	0.85[EUR][1000 genomes]
rs9381377	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9381383	0.84[EUR][1000 genomes]
rs9395069	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs9395084	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9395086	0.91[EUR][1000 genomes]
rs9395087	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9395095	0.85[EUR][1000 genomes]
rs9463078	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9463081	0.90[EUR][1000 genomes]
rs9463083	0.83[EUR][1000 genomes]
rs9472460	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028393	chr6:44875558-45822335	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv538211	chr6:44875558-45822335	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv1024370	chr6:44878053-45251451	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	esv2763550	chr6:45186825-45275593	Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv830652	chr6:45187467-45328983	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4506035	SUPT3H	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45248200-45249400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
2	chr6:45248800-45249600	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:45248800-45249600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
4	chr6:45248800-45249600	ZNF genes & repeats	Aorta	Aorta
5	chr6:45248800-45249600	ZNF genes & repeats	Fetal Intestine Small	intestine
6	chr6:45249000-45249600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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