Variant report

Variant	rs9381377
Chromosome Location	chr6:45204631-45204632
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10948222	0.86[EUR][1000 genomes]
rs12204678	0.80[EUR][1000 genomes]
rs1324531	0.83[EUR][1000 genomes]
rs1555681	0.83[EUR][1000 genomes]
rs2093901	0.88[EUR][1000 genomes]
rs2093903	0.88[EUR][1000 genomes]
rs2396425	0.90[EUR][1000 genomes]
rs3923353	0.82[EUR][1000 genomes]
rs4446571	0.82[EUR][1000 genomes]
rs4506035	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4631280	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6458428	0.89[EUR][1000 genomes]
rs6935398	0.82[EUR][1000 genomes]
rs6937317	0.93[EUR][1000 genomes]
rs7451423	0.86[EUR][1000 genomes]
rs7743116	0.83[EUR][1000 genomes]
rs7770401	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9296453	0.85[EUR][1000 genomes]
rs9349315	0.90[EUR][1000 genomes]
rs9357471	0.82[EUR][1000 genomes]
rs9357478	0.89[EUR][1000 genomes]
rs9357480	0.85[EUR][1000 genomes]
rs9357484	0.82[EUR][1000 genomes]
rs9369552	0.85[EUR][1000 genomes]
rs9395069	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9395079	0.84[EUR][1000 genomes]
rs9395084	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9395086	0.86[EUR][1000 genomes]
rs9395087	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9463078	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9463081	0.85[EUR][1000 genomes]
rs9472460	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028393	chr6:44875558-45822335	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv538211	chr6:44875558-45822335	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv1024370	chr6:44878053-45251451	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv492309	chr6:45020402-45233484	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1032906	chr6:45069368-45212863	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1028068	chr6:45169010-45246577	Enhancers ZNF genes & repeats Weak transcription Strong transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	esv2763550	chr6:45186825-45275593	Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv830652	chr6:45187467-45328983	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9381377	SUPT3H	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45196800-45207600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:45201200-45204800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr6:45201200-45210000	Weak transcription	Ovary	ovary
4	chr6:45201400-45207200	Weak transcription	Aorta	Aorta
5	chr6:45201400-45207800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr6:45201400-45211800	Weak transcription	Fetal Heart	heart
7	chr6:45203600-45204800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr6:45204000-45207200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr6:45204400-45207800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr6:45204600-45204800	Enhancers	Dnd41	blood
11	chr6:45204600-45205000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr6:45204600-45205000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr6:45204600-45205000	Active TSS	Osteobl	bone
14	chr6:45204600-45205200	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr6:45204600-45205200	Active TSS	Liver	Liver

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