Variant report

Variant	rs4506713
Chromosome Location	chr12:41627699-41627700
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10506182	0.96[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs10748275	0.94[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs10785150	0.86[ASN][1000 genomes]
rs10785174	0.93[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs10785177	0.96[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs10879889	0.96[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs11180421	0.93[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs1346905	0.86[ASN][1000 genomes]
rs1367600	0.95[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs1405548	0.93[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs1431102	0.85[ASN][1000 genomes]
rs1431108	0.86[ASN][1000 genomes]
rs1431114	0.96[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs1431115	0.96[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs1431116	0.81[ASN][1000 genomes]
rs1852461	0.94[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs1870704	0.87[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs1966609	0.81[ASN][1000 genomes]
rs2060053	0.96[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs2060054	0.96[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs2060055	0.96[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs2195706	0.94[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs2897227	0.84[ASN][1000 genomes]
rs2897228	0.94[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs3911712	0.86[ASN][1000 genomes]
rs4278570	0.95[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs4768336	0.80[AFR][1000 genomes]
rs6582280	0.94[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs6582281	0.91[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs6582282	0.94[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs6582283	0.92[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs7137842	0.92[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs7304286	0.96[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs7487688	0.86[ASN][1000 genomes]
rs7961556	0.92[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs7961657	0.91[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs7980599	0.86[ASN][1000 genomes]
rs9788073	0.95[AFR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497867	chr12:41286305-41728650	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv427910	chr12:41374913-41650593	Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1051524	chr12:41409977-41643387	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv899034	chr12:41515090-41698342	Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv899035	chr12:41548545-41710912	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:41623200-41635600	Weak transcription	Colon Smooth Muscle	Colon
2	chr12:41623600-41637000	Weak transcription	Ovary	ovary

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