Variant report

Variant	rs4511940
Chromosome Location	chr3:144219392-144219393
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1178893	0.94[EUR][1000 genomes]
rs1178896	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1178897	0.89[EUR][1000 genomes]
rs1182797	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13064218	0.84[AFR][1000 genomes]
rs13076501	1.00[ASN][1000 genomes]
rs13078166	0.84[AFR][1000 genomes]
rs1527232	0.92[EUR][1000 genomes]
rs1527233	0.92[EUR][1000 genomes]
rs1527234	0.92[EUR][1000 genomes]
rs1527237	0.94[EUR][1000 genomes]
rs1613644	0.92[EUR][1000 genomes]
rs1622836	0.91[EUR][1000 genomes]
rs1628072	0.92[EUR][1000 genomes]
rs1656995	0.92[EUR][1000 genomes]
rs1656996	0.92[EUR][1000 genomes]
rs1656997	0.92[EUR][1000 genomes]
rs1657004	0.91[EUR][1000 genomes]
rs1726524	0.91[EUR][1000 genomes]
rs1726526	0.91[EUR][1000 genomes]
rs1726528	0.91[EUR][1000 genomes]
rs1726532	0.92[EUR][1000 genomes]
rs1726535	0.92[EUR][1000 genomes]
rs2196491	0.82[EUR][1000 genomes]
rs2204603	0.86[EUR][1000 genomes]
rs2717375	0.83[EUR][1000 genomes]
rs2717376	0.91[EUR][1000 genomes]
rs2717377	0.83[EUR][1000 genomes]
rs2717379	0.86[EUR][1000 genomes]
rs2889043	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs34636454	0.83[AFR][1000 genomes]
rs7628404	1.00[ASN][1000 genomes]
rs920144	0.92[EUR][1000 genomes]
rs920145	0.92[EUR][1000 genomes]
rs920147	0.92[EUR][1000 genomes]
rs9811286	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9845422	1.00[ASN][1000 genomes]
rs9852425	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9857731	1.00[ASN][1000 genomes]
rs9864125	1.00[ASN][1000 genomes]
rs9871303	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532633	chr3:143802417-144440646	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv591928	chr3:144050897-144822081	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv2756108	chr3:144177836-144301659	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv877571	chr3:144188561-144291254	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:144215600-144220400	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr3:144216400-144221000	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr3:144216600-144221000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr3:144218400-144219600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr3:144218400-144220200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr3:144218600-144220400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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