Variant report

Variant	rs9852425
Chromosome Location	chr3:144215405-144215406
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1178893	0.94[EUR][1000 genomes]
rs1178896	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1178897	0.89[EUR][1000 genomes]
rs1182797	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13064218	0.83[AFR][1000 genomes]
rs13076501	1.00[ASN][1000 genomes]
rs13078166	0.83[AFR][1000 genomes]
rs1527232	0.92[EUR][1000 genomes]
rs1527233	0.92[EUR][1000 genomes]
rs1527234	0.92[EUR][1000 genomes]
rs1527237	0.94[EUR][1000 genomes]
rs1613644	0.92[EUR][1000 genomes]
rs1622836	0.92[EUR][1000 genomes]
rs1628072	0.92[EUR][1000 genomes]
rs1656995	0.92[EUR][1000 genomes]
rs1656996	0.92[EUR][1000 genomes]
rs1656997	0.92[EUR][1000 genomes]
rs1657004	0.91[EUR][1000 genomes]
rs1725559	1.00[CHB][hapmap]
rs1726524	0.91[EUR][1000 genomes]
rs1726526	0.92[EUR][1000 genomes]
rs1726528	0.92[EUR][1000 genomes]
rs1726532	0.92[EUR][1000 genomes]
rs1726535	0.92[EUR][1000 genomes]
rs2196491	0.82[EUR][1000 genomes]
rs2204603	0.86[EUR][1000 genomes]
rs2717375	0.83[EUR][1000 genomes]
rs2717376	0.92[EUR][1000 genomes]
rs2717377	0.82[EUR][1000 genomes]
rs2717379	0.86[EUR][1000 genomes]
rs2889043	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34636454	0.82[AFR][1000 genomes]
rs4511940	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7628404	1.00[ASN][1000 genomes]
rs920144	0.92[EUR][1000 genomes]
rs920145	0.92[EUR][1000 genomes]
rs920147	0.92[EUR][1000 genomes]
rs931773	1.00[CHB][hapmap]
rs9811286	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9845422	1.00[ASN][1000 genomes]
rs9857731	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9864125	1.00[ASN][1000 genomes]
rs9871303	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532633	chr3:143802417-144440646	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1011685	chr3:143959237-144218424	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv536751	chr3:143959237-144218424	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv591928	chr3:144050897-144822081	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	esv2756108	chr3:144177836-144301659	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv877571	chr3:144188561-144291254	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:144214600-144215600	Enhancers	Fetal Lung	lung
2	chr3:144214800-144215600	Enhancers	Brain Anterior Caudate	brain
3	chr3:144214800-144215600	Enhancers	Brain Inferior Temporal Lobe	brain
4	chr3:144215000-144215600	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr3:144215000-144215600	Enhancers	Brain Hippocampus Middle	brain
6	chr3:144215200-144215600	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr3:144215200-144215600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr3:144215200-144215600	Enhancers	Brain Angular Gyrus	brain
9	chr3:144215400-144215600	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr3:144215400-144216600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr3:144215400-144217400	Weak transcription	HUVEC	blood vessel

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