Variant report
Variant | rs4513113 |
---|---|
Chromosome Location | chr16:80760582-80760583 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
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(count:3 , 50 per page) page:
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rs_ID | r2[population] |
---|---|
rs1115000 | 0.85[AMR][1000 genomes] |
rs12599899 | 0.85[AMR][1000 genomes];0.93[ASN][1000 genomes] |
rs16953944 | 0.82[CEU][hapmap];0.88[TSI][hapmap] |
rs16953946 | 0.82[CEU][hapmap] |
rs1901588 | 0.84[AMR][1000 genomes];0.93[ASN][1000 genomes] |
rs28451896 | 0.86[AMR][1000 genomes] |
rs3100173 | 0.81[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.93[ASN][1000 genomes] |
rs3100174 | 0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs3100175 | 0.80[AMR][1000 genomes];0.93[ASN][1000 genomes] |
rs3100176 | 0.87[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs3100178 | 0.82[AMR][1000 genomes] |
rs3114391 | 0.81[CEU][hapmap];0.82[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.86[ASN][1000 genomes] |
rs4580175 | 0.81[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.95[ASN][1000 genomes] |
rs6564786 | 0.83[AMR][1000 genomes] |
rs7187075 | 0.91[CEU][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs7187300 | 0.83[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs7190314 | 0.89[AMR][1000 genomes] |
rs7190315 | 0.82[AMR][1000 genomes] |
rs729936 | 0.81[CEU][hapmap];0.82[CHB][hapmap];0.82[GIH][hapmap];0.89[JPT][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs8044056 | 0.85[AMR][1000 genomes] |
rs8047203 | 0.90[CEU][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs8048249 | 0.81[CEU][hapmap];0.81[CHB][hapmap];0.87[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.87[ASN][1000 genomes] |
rs8049492 | 0.80[AMR][1000 genomes];0.87[ASN][1000 genomes] |
rs8050234 | 0.85[AMR][1000 genomes] |
rs8055305 | 0.82[AMR][1000 genomes] |
rs9922556 | 0.82[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.91[AMR][1000 genomes];0.96[ASN][1000 genomes] |
rs9924703 | 0.80[AMR][1000 genomes] |
rs9932033 | 0.82[TSI][hapmap] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1060621 | chr16:80532848-80980616 | Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 29 gene(s) | inside rSNPs | diseases |
2 | nsv542989 | chr16:80532848-80980616 | Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 29 gene(s) | inside rSNPs | diseases |
3 | nsv1057357 | chr16:80662770-80794945 | Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
4 | esv3451298 | chr16:80696935-80997389 | Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 21 gene(s) | inside rSNPs | diseases |
5 | esv3350075 | chr16:80696955-80997359 | Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 21 gene(s) | inside rSNPs | diseases |
6 | nsv542990 | chr16:80729797-80918198 | Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
7 | nsv833301 | chr16:80732170-80928751 | Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr16:80760200-80761600 | Weak transcription | Primary T killer memory cells from peripheral blood | blood |
2 | chr16:80760400-80760600 | Enhancers | Hela-S3 | cervix |
3 | chr16:80760400-80762000 | Enhancers | Primary T cells fromperipheralblood | blood |