Variant report

Variant	rs4580175
Chromosome Location	chr16:80754387-80754388
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:80708985..80711337-chr16:80752928..80755974,3	MCF-7	breast:
2	chr16:80752468..80754903-chr16:80836193..80838722,3	MCF-7	breast:
3	chr16:80753856..80755452-chr16:80810403..80813281,2	MCF-7	breast:
4	chr16:80744947..80746729-chr16:80753397..80755885,2	MCF-7	breast:
5	chr16:80752658..80755251-chr16:80863514..80866042,2	MCF-7	breast:
6	chr16:80648695..80650960-chr16:80752549..80754538,2	MCF-7	breast:
7	chr16:80713625..80716646-chr16:80751671..80755053,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000166446	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1115000	0.94[MEX][hapmap];0.88[AMR][1000 genomes]
rs12599899	0.88[ASN][1000 genomes]
rs1901588	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28451896	0.92[AMR][1000 genomes]
rs3100173	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3100174	0.89[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs3100175	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3100176	0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs3100178	0.88[AMR][1000 genomes]
rs3114391	0.89[CEU][hapmap];0.88[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4513113	0.81[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6564786	0.84[AMR][1000 genomes]
rs7187075	0.80[CEU][hapmap];0.89[MEX][hapmap];0.81[AMR][1000 genomes]
rs7187300	0.81[AMR][1000 genomes]
rs7190314	0.84[AMR][1000 genomes]
rs7190315	0.89[MEX][hapmap]
rs7199769	0.84[MEX][hapmap]
rs729936	0.87[CHB][hapmap];0.82[CHD][hapmap];0.89[JPT][hapmap];0.95[MEX][hapmap];0.87[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs8044056	0.94[MEX][hapmap];0.88[AMR][1000 genomes]
rs8048249	0.89[CEU][hapmap];0.87[CHB][hapmap];0.92[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.85[TSI][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8049492	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8050234	0.88[AMR][1000 genomes]
rs8055305	0.88[AMR][1000 genomes]
rs9922556	0.89[CEU][hapmap];0.87[CHB][hapmap];0.94[JPT][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9924703	0.89[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1060621	chr16:80532848-80980616	Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
2	nsv542989	chr16:80532848-80980616	Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
3	nsv1057357	chr16:80662770-80794945	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv3451298	chr16:80696935-80997389	Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	esv3350075	chr16:80696955-80997359	Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
6	nsv542990	chr16:80729797-80918198	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
7	nsv833301	chr16:80732170-80928751	Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80751800-80754600	Enhancers	Spleen	Spleen
2	chr16:80751800-80755200	Genic enhancers	Hela-S3	cervix
3	chr16:80751800-80755600	Enhancers	HUVEC	blood vessel
4	chr16:80752600-80756800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr16:80752800-80755000	Weak transcription	NHDF-Ad	bronchial
6	chr16:80752800-80756600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr16:80753000-80754600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
8	chr16:80753400-80754400	Enhancers	Primary T cells fromperipheralblood	blood
9	chr16:80753400-80754400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr16:80753400-80754600	Enhancers	Primary T helper naive cells from peripheral blood	blood
11	chr16:80753400-80754600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
12	chr16:80753400-80754600	Enhancers	Primary T helper cells PMA-I stimulated	--
13	chr16:80753400-80754600	Enhancers	Primary T helper cells fromperipheralblood	blood
14	chr16:80753400-80754600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
15	chr16:80753400-80755000	Enhancers	Primary B cells from peripheral blood	blood
16	chr16:80753600-80754400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
17	chr16:80753600-80755000	Enhancers	Primary hematopoietic stem cells short term culture	blood
18	chr16:80753800-80755600	Weak transcription	Esophagus	oesophagus
19	chr16:80754000-80756000	Enhancers	Primary hematopoietic stem cells	blood
20	chr16:80754200-80755000	Enhancers	Brain Anterior Caudate	brain
21	chr16:80754200-80755000	Flanking Active TSS	GM12878-XiMat	blood

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