Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10431603	0.85[JPT][hapmap]
rs10506205	0.85[JPT][hapmap]
rs10880088	1.00[ASW][hapmap]
rs11180961	1.00[ASW][hapmap]
rs11180979	1.00[ASW][hapmap]
rs11180981	1.00[ASW][hapmap]
rs11180989	1.00[ASW][hapmap]
rs157972	0.86[CHD][hapmap];0.85[JPT][hapmap]
rs158190	0.85[JPT][hapmap]
rs17579291	1.00[ASW][hapmap]
rs285563	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs285564	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs285565	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs285566	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs285568	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs285569	1.00[ASW][hapmap];0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap];0.97[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs285581	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs285586	1.00[ASW][hapmap]
rs286978	0.88[ASN][1000 genomes]
rs286979	0.88[ASN][1000 genomes]
rs286991	0.88[CHD][hapmap];0.85[JPT][hapmap]
rs286997	0.90[ASN][1000 genomes]
rs287000	0.90[ASN][1000 genomes]
rs287030	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs287042	0.88[ASN][1000 genomes]
rs725527	1.00[ASW][hapmap]
rs7963993	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3337301	chr12:41851654-42093677	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv899040	chr12:41905897-42181706	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4514489	PDZRN4	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:41993200-41999000	Weak transcription	H9 Cell Line	embryonic stem cell

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