Variant report

Variant	rs285564
Chromosome Location	chr12:41976403-41976404
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10431603	0.82[JPT][hapmap]
rs10506199	0.85[AFR][1000 genomes]
rs10506200	0.85[AFR][1000 genomes]
rs10506205	0.85[JPT][hapmap]
rs157972	0.82[JPT][hapmap]
rs158190	0.85[JPT][hapmap]
rs17129531	0.85[AFR][1000 genomes]
rs17129534	0.85[AFR][1000 genomes]
rs17129537	0.85[AFR][1000 genomes]
rs17129541	0.85[AFR][1000 genomes]
rs285563	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs285565	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs285566	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs285568	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs285569	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs285581	0.81[EUR][1000 genomes]
rs286978	0.88[ASN][1000 genomes]
rs286979	0.88[ASN][1000 genomes]
rs286991	0.82[JPT][hapmap]
rs286997	0.90[ASN][1000 genomes]
rs287000	0.90[ASN][1000 genomes]
rs287030	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs287042	0.88[ASN][1000 genomes]
rs4514489	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55792075	0.84[AFR][1000 genomes]
rs56261613	0.85[AFR][1000 genomes]
rs56794218	0.85[AFR][1000 genomes]
rs57546774	0.85[AFR][1000 genomes]
rs58063208	0.85[AFR][1000 genomes]
rs58072732	0.85[AFR][1000 genomes]
rs58194527	0.85[AFR][1000 genomes]
rs58372295	0.85[AFR][1000 genomes]
rs60114889	0.85[AFR][1000 genomes]
rs60304731	0.85[AFR][1000 genomes]
rs61024587	0.85[AFR][1000 genomes]
rs61152857	0.85[AFR][1000 genomes]
rs61518477	0.85[AFR][1000 genomes]
rs7134836	0.85[AFR][1000 genomes]
rs7299844	0.85[AFR][1000 genomes]
rs7300013	0.85[AFR][1000 genomes]
rs7300654	0.85[AFR][1000 genomes]
rs7304463	0.85[AFR][1000 genomes]
rs7316657	0.85[AFR][1000 genomes]
rs73282241	0.81[AFR][1000 genomes]
rs73282253	0.83[AFR][1000 genomes]
rs73282257	0.83[AFR][1000 genomes]
rs73282264	0.85[AFR][1000 genomes]
rs74077884	0.81[AFR][1000 genomes]
rs74079833	0.83[AFR][1000 genomes]
rs7963993	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3337301	chr12:41851654-42093677	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv899040	chr12:41905897-42181706	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:41967400-41976600	Weak transcription	Colon Smooth Muscle	Colon
2	chr12:41973400-41976600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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