Variant report

Variant	rs56794218
Chromosome Location	chr12:41975304-41975305
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10506199	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10506200	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17129531	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17129534	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17129537	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17129541	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs285564	0.85[AFR][1000 genomes]
rs55792075	0.99[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs55856507	1.00[AMR][1000 genomes]
rs55884504	1.00[AMR][1000 genomes]
rs55968872	1.00[AMR][1000 genomes]
rs56146127	1.00[AMR][1000 genomes]
rs56185948	1.00[AMR][1000 genomes]
rs56261613	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57546774	1.00[AFR][1000 genomes]
rs57751766	0.85[AMR][1000 genomes]
rs58063208	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58072732	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58194527	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58372295	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59441074	1.00[AMR][1000 genomes]
rs60079864	1.00[AMR][1000 genomes]
rs60114889	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60304731	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60979113	0.85[AMR][1000 genomes]
rs61024587	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61152857	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61518477	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7134836	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7299844	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7300013	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7300654	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7303110	1.00[AMR][1000 genomes]
rs7304463	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7316657	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73282241	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73282253	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73282257	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73282264	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74077884	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74078220	1.00[AMR][1000 genomes]
rs74078239	0.85[AMR][1000 genomes]
rs74079833	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74079834	1.00[AMR][1000 genomes]
rs74079835	1.00[AMR][1000 genomes]
rs74079837	1.00[AMR][1000 genomes]
rs74079839	1.00[AMR][1000 genomes]
rs74079840	1.00[AMR][1000 genomes]
rs74079841	1.00[AMR][1000 genomes]
rs74079843	1.00[AMR][1000 genomes]
rs74079844	1.00[AMR][1000 genomes]
rs74079848	1.00[AMR][1000 genomes]
rs74079849	1.00[AMR][1000 genomes]
rs74079850	1.00[AMR][1000 genomes]
rs74079851	1.00[AMR][1000 genomes]
rs74079852	1.00[AMR][1000 genomes]
rs74079853	1.00[AMR][1000 genomes]
rs74079855	1.00[AMR][1000 genomes]
rs74079857	1.00[AMR][1000 genomes]
rs74079859	1.00[AMR][1000 genomes]
rs74079861	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3337301	chr12:41851654-42093677	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv899040	chr12:41905897-42181706	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:41967000-41975600	Weak transcription	Aorta	Aorta
2	chr12:41967400-41976600	Weak transcription	Colon Smooth Muscle	Colon
3	chr12:41968400-41975400	Weak transcription	Stomach Smooth Muscle	stomach
4	chr12:41973400-41976600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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