Variant report

Variant	rs60979113
Chromosome Location	chr12:42009740-42009741
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10506199	0.85[AMR][1000 genomes]
rs10506200	0.85[AMR][1000 genomes]
rs17129531	0.85[AMR][1000 genomes]
rs17129534	0.85[AMR][1000 genomes]
rs17129537	0.85[AMR][1000 genomes]
rs17129541	0.85[AMR][1000 genomes]
rs55856507	0.85[AMR][1000 genomes]
rs55884504	0.85[AMR][1000 genomes]
rs55968872	0.85[AMR][1000 genomes]
rs56146127	0.85[AMR][1000 genomes]
rs56185948	0.85[AMR][1000 genomes]
rs56261613	0.85[AMR][1000 genomes]
rs56794218	0.85[AMR][1000 genomes]
rs57751766	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58063208	0.85[AMR][1000 genomes]
rs58072732	0.85[AMR][1000 genomes]
rs58194527	0.85[AMR][1000 genomes]
rs58372295	0.85[AMR][1000 genomes]
rs59441074	0.85[AMR][1000 genomes]
rs60079864	0.85[AMR][1000 genomes]
rs60114889	0.85[AMR][1000 genomes]
rs60304731	0.85[AMR][1000 genomes]
rs61024587	0.85[AMR][1000 genomes]
rs61152857	0.85[AMR][1000 genomes]
rs61518477	0.85[AMR][1000 genomes]
rs7134836	0.85[AMR][1000 genomes]
rs7299844	0.85[AMR][1000 genomes]
rs7300013	0.85[AMR][1000 genomes]
rs7300654	0.85[AMR][1000 genomes]
rs7303110	0.85[AMR][1000 genomes]
rs7304463	0.85[AMR][1000 genomes]
rs7316657	0.85[AMR][1000 genomes]
rs73282241	0.85[AMR][1000 genomes]
rs73282253	0.85[AMR][1000 genomes]
rs73282257	0.85[AMR][1000 genomes]
rs73282264	0.85[AMR][1000 genomes]
rs74077884	0.85[AMR][1000 genomes]
rs74078220	0.85[AMR][1000 genomes]
rs74078239	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74079833	0.85[AMR][1000 genomes]
rs74079834	0.85[AMR][1000 genomes]
rs74079835	0.85[AMR][1000 genomes]
rs74079837	0.85[AMR][1000 genomes]
rs74079839	0.85[AMR][1000 genomes]
rs74079840	0.85[AMR][1000 genomes]
rs74079841	0.85[AMR][1000 genomes]
rs74079843	0.85[AMR][1000 genomes]
rs74079844	0.85[AMR][1000 genomes]
rs74079848	0.85[AMR][1000 genomes]
rs74079849	0.85[AMR][1000 genomes]
rs74079850	0.85[AMR][1000 genomes]
rs74079851	0.85[AMR][1000 genomes]
rs74079852	0.85[AMR][1000 genomes]
rs74079853	0.85[AMR][1000 genomes]
rs74079855	0.85[AMR][1000 genomes]
rs74079857	0.85[AMR][1000 genomes]
rs74079859	0.85[AMR][1000 genomes]
rs74079861	0.85[AMR][1000 genomes]
rs7953295	0.83[AMR][1000 genomes]
rs7979404	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3337301	chr12:41851654-42093677	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv899040	chr12:41905897-42181706	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv899041	chr12:42005690-42072514	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:42000600-42012000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr12:42009400-42009800	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell

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