Variant report
Variant | rs4520017 |
---|---|
Chromosome Location | chr6:55407592-55407593 |
allele | A/C |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10223668 | 0.85[EUR][1000 genomes] |
rs10755781 | 0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs10948936 | 0.85[EUR][1000 genomes] |
rs10948939 | 0.88[EUR][1000 genomes] |
rs10948941 | 0.80[ASN][1000 genomes] |
rs10948942 | 0.84[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs12193162 | 0.84[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs12202288 | 0.80[ASN][1000 genomes] |
rs12209478 | 0.87[EUR][1000 genomes] |
rs13206666 | 0.85[EUR][1000 genomes] |
rs3800027 | 0.84[EUR][1000 genomes] |
rs4075708 | 0.80[ASN][1000 genomes] |
rs4075709 | 0.80[ASN][1000 genomes] |
rs4144577 | 0.85[EUR][1000 genomes] |
rs4236132 | 0.85[EUR][1000 genomes] |
rs4283891 | 0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs4314500 | 0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs4346853 | 0.80[ASN][1000 genomes] |
rs4360137 | 0.86[ASN][1000 genomes] |
rs4382261 | 0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs4388287 | 0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs4404773 | 0.84[EUR][1000 genomes] |
rs4431436 | 0.84[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs4445058 | 0.80[ASN][1000 genomes] |
rs4479933 | 0.80[ASN][1000 genomes] |
rs4489157 | 0.81[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs4496787 | 0.85[EUR][1000 genomes] |
rs4521577 | 0.80[ASN][1000 genomes] |
rs4537142 | 0.85[EUR][1000 genomes] |
rs4538708 | 0.83[EUR][1000 genomes] |
rs4588676 | 0.80[ASN][1000 genomes] |
rs4596474 | 0.84[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs4599641 | 0.82[EUR][1000 genomes] |
rs6459082 | 0.85[EUR][1000 genomes] |
rs6459083 | 0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs6459084 | 0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs6905376 | 0.80[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs6908139 | 0.85[EUR][1000 genomes] |
rs6914087 | 0.87[EUR][1000 genomes] |
rs6925488 | 0.85[EUR][1000 genomes] |
rs6936172 | 0.87[EUR][1000 genomes] |
rs7452170 | 0.86[EUR][1000 genomes] |
rs7740208 | 0.87[EUR][1000 genomes] |
rs7741830 | 0.80[ASN][1000 genomes] |
rs7744273 | 0.88[EUR][1000 genomes] |
rs7744986 | 0.87[EUR][1000 genomes] |
rs7745290 | 0.88[EUR][1000 genomes];0.80[ASN][1000 genomes] |
rs7756201 | 0.82[EUR][1000 genomes] |
rs7760065 | 0.85[EUR][1000 genomes] |
rs7761740 | 0.87[EUR][1000 genomes] |
rs9296793 | 0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs9367640 | 0.80[ASN][1000 genomes] |
rs9370438 | 0.84[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs9382497 | 0.84[EUR][1000 genomes] |
rs9382503 | 0.80[AFR][1000 genomes] |
rs9382506 | 0.84[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs9464253 | 0.85[EUR][1000 genomes] |
rs9464254 | 0.85[EUR][1000 genomes] |
rs9464258 | 0.86[EUR][1000 genomes] |
rs9475333 | 0.85[EUR][1000 genomes] |
rs9475335 | 0.85[EUR][1000 genomes] |
rs9475336 | 0.85[EUR][1000 genomes] |
rs9475337 | 0.87[EUR][1000 genomes] |
rs9475339 | 0.87[EUR][1000 genomes] |
rs9475342 | 0.86[ASN][1000 genomes] |
rs9475344 | 0.86[ASN][1000 genomes] |
rs9791201 | 0.87[EUR][1000 genomes] |
rs9791304 | 0.89[EUR][1000 genomes] |
rs9791308 | 0.87[EUR][1000 genomes] |
rs9791360 | 0.87[EUR][1000 genomes] |
rs9885775 | 0.85[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1034037 | chr6:55222409-56069600 | Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 7 gene(s) | inside rSNPs | diseases |
2 | nsv948358 | chr6:55351282-55477277 | Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
3 | nsv1026411 | chr6:55372845-55653498 | Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
4 | esv3328151 | chr6:55406868-55409316 | Weak transcription Enhancers | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
5 | esv3437260 | chr6:55407243-55409091 | Weak transcription Enhancers | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr6:55384400-55410200 | Weak transcription | Pancreatic Islets | Pancreatic Islet |
2 | chr6:55400400-55418600 | Weak transcription | Breast Myoepithelial Primary Cells | Breast |
3 | chr6:55404400-55407600 | Weak transcription | Fetal Lung | lung |