Variant report

Variant	rs4520104
Chromosome Location	chr7:129243053-129243054
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:129236409..129239429-chr7:129241523..129243735,3	K562	blood:
2	chr7:129239952..129242205-chr7:129243025..129245366,3	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-UBE2H-2	chr7:129242678-129251482	NONHSAT123298

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10215964	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10226046	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10245497	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10249998	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10275592	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10279839	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10808238	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10954244	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10954246	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1450878	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1562833	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1619066	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1975644	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2402958	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2896418	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2896419	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4728171	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4731600	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4731607	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs602616	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6467252	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6467253	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6467255	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs676366	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs690686	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6954452	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6961102	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6966688	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6967348	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7788769	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7797035	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7799885	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7802041	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7805465	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs896156	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9690361	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9691578	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9792084	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:129232600-129246000	Weak transcription	HMEC	breast
2	chr7:129232600-129246800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr7:129233400-129246600	Weak transcription	NHEK	skin
4	chr7:129233400-129247400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr7:129233600-129246600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr7:129233800-129246400	Weak transcription	Placenta	Placenta
7	chr7:129235200-129249000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr7:129235200-129249800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr7:129235200-129250200	Weak transcription	Right Atrium	heart
10	chr7:129235400-129245800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr7:129236000-129245800	Weak transcription	A549	lung
12	chr7:129236000-129249000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr7:129237000-129246400	Weak transcription	HSMM	muscle
14	chr7:129237000-129248800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr7:129237000-129249800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr7:129238200-129248200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr7:129238800-129250400	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr7:129240200-129250400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr7:129241400-129247200	Weak transcription	Fetal Thymus	thymus
20	chr7:129242600-129246400	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr7:129242800-129243400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
22	chr7:129242800-129250400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr7:129243000-129243200	Enhancers	Primary T helper cells PMA-I stimulated	--
24	chr7:129243000-129246600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr7:129243000-129248200	Weak transcription	Fetal Kidney	kidney

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