Variant report

Variant	rs10249998
Chromosome Location	chr7:129258599-129258600
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:129258265..129261102-chr7:129275466..129276981,2	K562	blood:
2	chr7:129256509..129259242-chr7:129259807..129261335,2	MCF-7	breast:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10215964	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10226046	0.80[EUR][1000 genomes]
rs10245497	0.80[EUR][1000 genomes]
rs10252513	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10275592	0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10279839	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10808238	0.84[AMR][1000 genomes]
rs10808240	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10954244	0.80[EUR][1000 genomes]
rs1450878	0.80[EUR][1000 genomes]
rs1562833	0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2402958	0.80[EUR][1000 genomes]
rs2402965	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2402966	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2402968	0.93[ASN][1000 genomes]
rs2896418	0.80[EUR][1000 genomes]
rs2896419	0.80[EUR][1000 genomes]
rs4292630	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4348430	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4520104	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4731600	0.80[EUR][1000 genomes]
rs4731607	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4731608	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6467255	0.84[AMR][1000 genomes]
rs6467257	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6961102	0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6966688	0.80[EUR][1000 genomes]
rs6967348	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7778085	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7786760	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7788769	0.80[EUR][1000 genomes]
rs7788849	0.96[ASN][1000 genomes]
rs7799885	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7802940	0.82[ASN][1000 genomes]
rs7803431	0.92[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs7805465	0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9690361	0.80[EUR][1000 genomes]
rs9691578	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9792084	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:129252800-129285800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr7:129253000-129259000	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr7:129253000-129260200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
4	chr7:129253000-129262400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr7:129253000-129262400	Weak transcription	Ovary	ovary
6	chr7:129253000-129297200	Weak transcription	Lung	lung
7	chr7:129253200-129258800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr7:129253200-129259000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
9	chr7:129253200-129259400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
10	chr7:129253200-129260200	Enhancers	Primary T helper naive cells from peripheral blood	blood
11	chr7:129253200-129260200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
12	chr7:129253200-129262200	Weak transcription	NH-A	brain
13	chr7:129253200-129267200	Weak transcription	Spleen	Spleen
14	chr7:129253200-129269800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr7:129253200-129278200	Weak transcription	Right Ventricle	heart
16	chr7:129253200-129283200	Weak transcription	HSMM	muscle
17	chr7:129253400-129258600	Enhancers	Primary T cells from cord blood	blood
18	chr7:129253400-129259800	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr7:129253400-129260400	Enhancers	Primary T helper cells PMA-I stimulated	--
20	chr7:129253400-129264200	Enhancers	Primary T helper cells fromperipheralblood	blood
21	chr7:129253400-129271200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr7:129253400-129275400	Weak transcription	Brain Cingulate Gyrus	brain
23	chr7:129253400-129281800	Weak transcription	Stomach Mucosa	stomach
24	chr7:129253800-129267400	Weak transcription	Fetal Muscle Trunk	muscle
25	chr7:129253800-129297200	Weak transcription	Fetal Stomach	stomach
26	chr7:129254400-129259000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
27	chr7:129254600-129267000	Weak transcription	Fetal Brain Female	brain
28	chr7:129255200-129259600	Weak transcription	Fetal Intestine Small	intestine
29	chr7:129255200-129260200	Enhancers	HepG2	liver
30	chr7:129255200-129275200	Weak transcription	Muscle Satellite Cultured Cells	--
31	chr7:129255200-129286200	Weak transcription	Hela-S3	cervix
32	chr7:129255400-129267000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
33	chr7:129255600-129263000	Weak transcription	Fetal Heart	heart
34	chr7:129255600-129269000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr7:129255600-129278000	Weak transcription	Fetal Lung	lung
36	chr7:129255800-129259400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr7:129256400-129267600	Weak transcription	Rectal Mucosa Donor 29	rectum
38	chr7:129256400-129274600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr7:129256600-129261600	Weak transcription	Left Ventricle	heart
40	chr7:129256600-129262400	Weak transcription	Pancreas	Pancrea
41	chr7:129256600-129265800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr7:129256600-129267200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr7:129256600-129269400	Weak transcription	Primary B cells from peripheral blood	blood
44	chr7:129256600-129283400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr7:129256600-129284400	Weak transcription	HMEC	breast
46	chr7:129256600-129286600	Weak transcription	Thymus	Thymus
47	chr7:129256800-129264600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
48	chr7:129257200-129258600	Enhancers	Primary T cells fromperipheralblood	blood
49	chr7:129257200-129266000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
50	chr7:129257400-129259000	Enhancers	Sigmoid Colon	Sigmoid Colon

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