Variant report

Variant	rs7778085
Chromosome Location	chr7:129285395-129285396
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:129269611..129271899-chr7:129283285..129286284,2	K562	blood:
2	chr7:129278716..129282382-chr7:129282480..129285951,5	MCF-7	breast:
3	chr7:129259213..129260936-chr7:129285295..129288130,2	MCF-7	breast:
4	chr7:129280760..129282506-chr7:129284829..129287811,2	K562	blood:
5	chr7:129249586..129251505-chr7:129284306..129286210,2	MCF-7	breast:
6	chr7:129250405..129253586-chr7:129279749..129286274,9	MCF-7	breast:
7	chr7:129249547..129251363-chr7:129284071..129286365,2	K562	blood:
8	chr7:128863244..128865301-chr7:129282640..129285577,2	K562	blood:
9	chr7:129285246..129287176-chr7:129465957..129468026,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000158467	Chromatin interaction
ENSG00000106459	Chromatin interaction
ENSG00000273329	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10215964	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.93[ASN][1000 genomes]
rs10245497	0.91[CEU][hapmap];0.86[CHB][hapmap]
rs10249998	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10252513	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10255077	1.00[CHB][hapmap]
rs10275592	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.93[ASN][1000 genomes]
rs10279839	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10808240	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1450878	0.91[CEU][hapmap];0.86[CHB][hapmap]
rs1562833	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.93[ASN][1000 genomes]
rs1882094	0.94[YRI][hapmap]
rs2402965	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2402966	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2402968	1.00[CHB][hapmap];1.00[YRI][hapmap];0.93[ASN][1000 genomes]
rs2402969	1.00[CHB][hapmap]
rs2402972	1.00[CHB][hapmap]
rs2896422	1.00[CHB][hapmap]
rs2896423	1.00[CHB][hapmap]
rs4292630	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4348430	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4379396	0.82[EUR][1000 genomes]
rs4728171	0.91[CEU][hapmap];0.85[CHB][hapmap]
rs4728177	1.00[CHB][hapmap]
rs4731607	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4731608	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4731612	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs4731621	1.00[CHB][hapmap]
rs6467255	0.91[CEU][hapmap];0.86[CHB][hapmap]
rs6467257	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6946418	0.94[YRI][hapmap]
rs6958958	1.00[CHB][hapmap]
rs6961102	0.93[ASN][1000 genomes]
rs6967348	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.93[ASN][1000 genomes]
rs6969441	0.94[YRI][hapmap]
rs7786760	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7788849	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7794909	0.88[CHB][hapmap]
rs7799885	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7802940	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs7803431	0.96[ASN][1000 genomes]
rs7805465	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs9792084	0.91[CEU][hapmap];1.00[CHB][hapmap];0.93[ASN][1000 genomes]

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:129252800-129285800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr7:129253000-129297200	Weak transcription	Lung	lung
3	chr7:129253800-129297200	Weak transcription	Fetal Stomach	stomach
4	chr7:129255200-129286200	Weak transcription	Hela-S3	cervix
5	chr7:129256600-129286600	Weak transcription	Thymus	Thymus
6	chr7:129257600-129288400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr7:129257800-129289000	Weak transcription	NHEK	skin
8	chr7:129257800-129297000	Weak transcription	Primary hematopoietic stem cells	blood
9	chr7:129257800-129297000	Weak transcription	Fetal Intestine Large	intestine
10	chr7:129257800-129297200	Weak transcription	Aorta	Aorta
11	chr7:129259000-129296800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr7:129259200-129286200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr7:129260200-129297200	Weak transcription	Fetal Intestine Small	intestine
14	chr7:129262800-129297000	Weak transcription	Primary T cells fromperipheralblood	blood
15	chr7:129265200-129297200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr7:129267800-129289000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr7:129270200-129293000	Weak transcription	Primary B cells from peripheral blood	blood
18	chr7:129271000-129293400	Weak transcription	Primary neutrophils fromperipheralblood	blood
19	chr7:129273400-129297000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr7:129275600-129297000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr7:129275600-129297200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr7:129275600-129297200	Weak transcription	HepG2	liver
23	chr7:129275800-129289000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
24	chr7:129277000-129297200	Weak transcription	Colon Smooth Muscle	Colon
25	chr7:129278400-129292800	Weak transcription	Fetal Lung	lung
26	chr7:129278400-129293400	Weak transcription	Primary T cells from cord blood	blood
27	chr7:129278400-129297000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
28	chr7:129278600-129289000	Weak transcription	Primary T helper cells fromperipheralblood	blood
29	chr7:129278800-129295400	Weak transcription	Primary monocytes fromperipheralblood	blood
30	chr7:129279200-129296800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr7:129280600-129297000	Weak transcription	Duodenum Mucosa	Duodenum
32	chr7:129281000-129297200	Weak transcription	Adipose Nuclei	Adipose
33	chr7:129282800-129287000	Enhancers	Fetal Heart	heart
34	chr7:129282800-129297400	Weak transcription	Duodenum Smooth Muscle	Duodenum
35	chr7:129283200-129286200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
36	chr7:129283400-129286200	Weak transcription	Left Ventricle	heart
37	chr7:129283400-129297200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr7:129283600-129286000	Weak transcription	HUES48 Cell Line	embryonic stem cell
39	chr7:129283600-129286000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
40	chr7:129283600-129286200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr7:129283600-129286200	Weak transcription	HUES6 Cell Line	embryonic stem cell
42	chr7:129283600-129297200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
43	chr7:129283600-129297200	Weak transcription	Gastric	stomach
44	chr7:129283800-129286000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
45	chr7:129283800-129286000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
46	chr7:129283800-129286200	Weak transcription	Fetal Thymus	thymus
47	chr7:129283800-129286200	Weak transcription	HSMM	muscle
48	chr7:129283800-129286200	Weak transcription	HSMMtube	muscle
49	chr7:129283800-129286400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr7:129283800-129292600	Weak transcription	GM12878-XiMat	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links