Variant report

Variant	rs6969441
Chromosome Location	chr7:129286408-129286409
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:129259213..129260936-chr7:129285295..129288130,2	MCF-7	breast:
2	chr7:129280760..129282506-chr7:129284829..129287811,2	K562	blood:
3	chr7:129285246..129287176-chr7:129465957..129468026,2	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10215964	0.88[YRI][hapmap]
rs10275592	0.88[YRI][hapmap]
rs10279858	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10808240	0.87[YRI][hapmap]
rs12154955	0.81[JPT][hapmap]
rs12666331	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12706898	0.85[JPT][hapmap]
rs1562833	0.88[YRI][hapmap]
rs1882094	0.91[CEU][hapmap];0.85[CHB][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1962039	0.85[CHB][hapmap]
rs2001583	0.87[CEU][hapmap];0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2402966	0.94[YRI][hapmap]
rs2402968	1.00[YRI][hapmap]
rs3778775	0.85[CHB][hapmap]
rs4728174	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6467257	0.94[YRI][hapmap]
rs6946418	0.91[CEU][hapmap];0.85[CHB][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6957596	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6958375	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6967348	0.88[YRI][hapmap]
rs7778085	0.94[YRI][hapmap]
rs7778681	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7781972	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7782520	0.97[AFR][1000 genomes];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7799770	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9641854	0.85[CHB][hapmap]
rs9656383	0.87[CEU][hapmap];0.85[CHB][hapmap]
rs9792084	0.83[YRI][hapmap]

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:129253000-129297200	Weak transcription	Lung	lung
2	chr7:129253800-129297200	Weak transcription	Fetal Stomach	stomach
3	chr7:129256600-129286600	Weak transcription	Thymus	Thymus
4	chr7:129257600-129288400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr7:129257800-129289000	Weak transcription	NHEK	skin
6	chr7:129257800-129297000	Weak transcription	Primary hematopoietic stem cells	blood
7	chr7:129257800-129297000	Weak transcription	Fetal Intestine Large	intestine
8	chr7:129257800-129297200	Weak transcription	Aorta	Aorta
9	chr7:129259000-129296800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr7:129260200-129297200	Weak transcription	Fetal Intestine Small	intestine
11	chr7:129262800-129297000	Weak transcription	Primary T cells fromperipheralblood	blood
12	chr7:129265200-129297200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr7:129267800-129289000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr7:129270200-129293000	Weak transcription	Primary B cells from peripheral blood	blood
15	chr7:129271000-129293400	Weak transcription	Primary neutrophils fromperipheralblood	blood
16	chr7:129273400-129297000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr7:129275600-129297000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr7:129275600-129297200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr7:129275600-129297200	Weak transcription	HepG2	liver
20	chr7:129275800-129289000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr7:129277000-129297200	Weak transcription	Colon Smooth Muscle	Colon
22	chr7:129278400-129292800	Weak transcription	Fetal Lung	lung
23	chr7:129278400-129293400	Weak transcription	Primary T cells from cord blood	blood
24	chr7:129278400-129297000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
25	chr7:129278600-129289000	Weak transcription	Primary T helper cells fromperipheralblood	blood
26	chr7:129278800-129295400	Weak transcription	Primary monocytes fromperipheralblood	blood
27	chr7:129279200-129296800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr7:129280600-129297000	Weak transcription	Duodenum Mucosa	Duodenum
29	chr7:129281000-129297200	Weak transcription	Adipose Nuclei	Adipose
30	chr7:129282800-129287000	Enhancers	Fetal Heart	heart
31	chr7:129282800-129297400	Weak transcription	Duodenum Smooth Muscle	Duodenum
32	chr7:129283400-129297200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr7:129283600-129297200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
34	chr7:129283600-129297200	Weak transcription	Gastric	stomach
35	chr7:129283800-129292600	Weak transcription	GM12878-XiMat	blood
36	chr7:129283800-129296800	Weak transcription	Dnd41	blood
37	chr7:129283800-129297200	Weak transcription	Sigmoid Colon	Sigmoid Colon
38	chr7:129283800-129331600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr7:129284000-129287400	Weak transcription	NH-A	brain
40	chr7:129284000-129288800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr7:129284000-129288800	Weak transcription	Primary T helper cells PMA-I stimulated	--
42	chr7:129284000-129289000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr7:129284000-129292800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr7:129284000-129293400	Weak transcription	Fetal Brain Female	brain
45	chr7:129284000-129297200	Weak transcription	Ovary	ovary
46	chr7:129284000-129297200	Weak transcription	Rectal Mucosa Donor 29	rectum
47	chr7:129284000-129297200	Weak transcription	NHDF-Ad	bronchial
48	chr7:129284000-129297400	Weak transcription	Brain Inferior Temporal Lobe	brain
49	chr7:129284000-129297600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr7:129284200-129297000	Weak transcription	Placenta	Placenta

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