Variant report

Variant	rs3778775
Chromosome Location	chr7:129359736-129359737
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:129350668..129352868-chr7:129358441..129360338,2	K562	blood:
2	chr7:129358443..129361944-chr7:129389455..129392209,3	K562	blood:
3	chr7:129357651..129362499-chr7:129363567..129368340,4	MCF-7	breast:
4	chr7:129358443..129361588-chr7:129390162..129392270,3	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10243809	0.94[AFR][1000 genomes]
rs1882094	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1962039	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4272311	0.85[ASN][1000 genomes]
rs4731617	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs4731621	0.80[YRI][hapmap]
rs62489295	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6467259	0.86[YRI][hapmap]
rs6946418	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs6969441	0.85[CHB][hapmap]
rs7778681	0.87[ASN][1000 genomes]
rs7782520	0.85[ASN][1000 genomes]
rs7807898	0.87[YRI][hapmap]
rs9641854	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9641855	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs9656383	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:129315600-129373600	Weak transcription	Psoas Muscle	Psoas
2	chr7:129319000-129380000	Weak transcription	NHDF-Ad	bronchial
3	chr7:129328000-129369000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr7:129339200-129381800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr7:129342800-129360200	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr7:129342800-129367000	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr7:129343200-129379600	Weak transcription	Stomach Mucosa	stomach
8	chr7:129343400-129361200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr7:129346800-129372400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr7:129347000-129360200	Strong transcription	Primary B cells from peripheral blood	blood
11	chr7:129348200-129375600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr7:129348200-129392000	Strong transcription	Primary T helper cells fromperipheralblood	blood
13	chr7:129348400-129372400	Strong transcription	Primary T helper cells PMA-I stimulated	--
14	chr7:129348400-129372400	Strong transcription	Dnd41	blood
15	chr7:129348600-129360600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr7:129348600-129360600	Strong transcription	Duodenum Mucosa	Duodenum
17	chr7:129348600-129360600	Strong transcription	Rectal Mucosa Donor 29	rectum
18	chr7:129348600-129360800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
19	chr7:129348600-129361200	Strong transcription	HUES48 Cell Line	embryonic stem cell
20	chr7:129348600-129372400	Strong transcription	HUES6 Cell Line	embryonic stem cell
21	chr7:129348600-129372600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr7:129348600-129375200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr7:129348600-129375800	Strong transcription	Primary T cells fromperipheralblood	blood
24	chr7:129348800-129360600	Strong transcription	Primary T cells from cord blood	blood
25	chr7:129348800-129360600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr7:129348800-129360600	Strong transcription	Fetal Muscle Trunk	muscle
27	chr7:129348800-129361400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr7:129349000-129360600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr7:129349000-129361200	Strong transcription	HUES64 Cell Line	embryonic stem cell
30	chr7:129350200-129360200	Strong transcription	Cortex derived primary cultured neurospheres	brain
31	chr7:129351600-129394800	Weak transcription	Hela-S3	cervix
32	chr7:129352600-129367000	Weak transcription	Colonic Mucosa	Colon
33	chr7:129352600-129371200	Weak transcription	HMEC	breast
34	chr7:129352800-129363800	Weak transcription	HUVEC	blood vessel
35	chr7:129353800-129367000	Weak transcription	Gastric	stomach
36	chr7:129354400-129360600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr7:129354800-129368400	Weak transcription	Fetal Heart	heart
38	chr7:129355000-129364200	Weak transcription	HSMMtube	muscle
39	chr7:129355200-129380600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr7:129356200-129360600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
41	chr7:129356400-129360400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
42	chr7:129356400-129360600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr7:129356400-129361200	Strong transcription	Stomach Smooth Muscle	stomach
44	chr7:129356400-129361200	Strong transcription	GM12878-XiMat	blood
45	chr7:129356600-129359800	Strong transcription	Brain Inferior Temporal Lobe	brain
46	chr7:129356600-129360000	Strong transcription	Rectal Mucosa Donor 31	rectum
47	chr7:129356600-129360200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr7:129356600-129360400	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
49	chr7:129356600-129360600	Strong transcription	Duodenum Smooth Muscle	Duodenum
50	chr7:129356600-129360600	Strong transcription	Fetal Muscle Leg	muscle

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