Variant report

Variant	rs9641854
Chromosome Location	chr7:129356122-129356123
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:129354570..129358914-chr7:129360217..129362870,6	K562	blood:
2	chr7:129351836..129354088-chr7:129355312..129358285,2	K562	blood:
3	chr7:129354570..129356381-chr7:129360399..129362297,3	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10243809	0.94[AFR][1000 genomes]
rs1882094	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1962039	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3778775	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4272311	0.83[ASN][1000 genomes]
rs4731617	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs4731621	0.82[YRI][hapmap]
rs62489295	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6467259	0.85[YRI][hapmap]
rs6946418	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs6969441	0.85[CHB][hapmap]
rs7778681	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7782520	0.83[ASN][1000 genomes]
rs7807898	0.87[YRI][hapmap]
rs9641855	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs9656383	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:129315400-129357000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr7:129315600-129373600	Weak transcription	Psoas Muscle	Psoas
3	chr7:129316400-129357200	Weak transcription	Fetal Brain Male	brain
4	chr7:129319000-129380000	Weak transcription	NHDF-Ad	bronchial
5	chr7:129328000-129369000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr7:129337600-129359200	Strong transcription	Monocytes-CD14+_RO01746	blood
7	chr7:129339200-129356800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr7:129339200-129381800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr7:129342800-129360200	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr7:129342800-129367000	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr7:129343200-129379600	Weak transcription	Stomach Mucosa	stomach
12	chr7:129343400-129361200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr7:129345800-129359200	Strong transcription	Fetal Thymus	thymus
14	chr7:129346800-129372400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr7:129347000-129360200	Strong transcription	Primary B cells from peripheral blood	blood
16	chr7:129348200-129375600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr7:129348200-129392000	Strong transcription	Primary T helper cells fromperipheralblood	blood
18	chr7:129348400-129372400	Strong transcription	Primary T helper cells PMA-I stimulated	--
19	chr7:129348400-129372400	Strong transcription	Dnd41	blood
20	chr7:129348600-129360600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr7:129348600-129360600	Strong transcription	Duodenum Mucosa	Duodenum
22	chr7:129348600-129360600	Strong transcription	Rectal Mucosa Donor 29	rectum
23	chr7:129348600-129360800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
24	chr7:129348600-129361200	Strong transcription	HUES48 Cell Line	embryonic stem cell
25	chr7:129348600-129372400	Strong transcription	HUES6 Cell Line	embryonic stem cell
26	chr7:129348600-129372600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
27	chr7:129348600-129375200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr7:129348600-129375800	Strong transcription	Primary T cells fromperipheralblood	blood
29	chr7:129348800-129358400	Strong transcription	Skeletal Muscle Male	skeletal muscle
30	chr7:129348800-129359400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
31	chr7:129348800-129359400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr7:129348800-129359400	Strong transcription	Fetal Intestine Small	intestine
33	chr7:129348800-129360600	Strong transcription	Primary T cells from cord blood	blood
34	chr7:129348800-129360600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
35	chr7:129348800-129360600	Strong transcription	Fetal Muscle Trunk	muscle
36	chr7:129348800-129361400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr7:129349000-129360600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr7:129349000-129361200	Strong transcription	HUES64 Cell Line	embryonic stem cell
39	chr7:129349400-129359600	Strong transcription	Primary B cells from cord blood	blood
40	chr7:129350000-129358000	Strong transcription	Brain Hippocampus Middle	brain
41	chr7:129350200-129360200	Strong transcription	Cortex derived primary cultured neurospheres	brain
42	chr7:129350800-129357000	Weak transcription	Small Intestine	intestine
43	chr7:129351400-129356800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr7:129351600-129394800	Weak transcription	Hela-S3	cervix
45	chr7:129351800-129356600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
46	chr7:129352600-129356600	Weak transcription	Lung	lung
47	chr7:129352600-129356800	Weak transcription	Brain Cingulate Gyrus	brain
48	chr7:129352600-129356800	Weak transcription	A549	lung
49	chr7:129352600-129357000	Weak transcription	Brain Germinal Matrix	brain
50	chr7:129352600-129357000	Weak transcription	Fetal Kidney	kidney

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