Variant report

Variant	rs62489295
Chromosome Location	chr7:129314268-129314269
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10236959	0.88[ASN][1000 genomes]
rs10270813	0.87[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1882094	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1962039	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3778775	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4272311	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6946418	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7778681	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7782520	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9641854	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9656383	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:129283800-129331600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr7:129290000-129325800	Weak transcription	Stomach Mucosa	stomach
3	chr7:129297800-129349800	Weak transcription	Small Intestine	intestine
4	chr7:129301000-129330200	Weak transcription	Gastric	stomach
5	chr7:129302000-129314400	Weak transcription	Aorta	Aorta
6	chr7:129302000-129314600	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr7:129302000-129314800	Weak transcription	Brain Cingulate Gyrus	brain
8	chr7:129302000-129315400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr7:129302000-129317000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr7:129302000-129331800	Weak transcription	Esophagus	oesophagus
11	chr7:129303400-129314400	Weak transcription	Colonic Mucosa	Colon
12	chr7:129305000-129314600	Weak transcription	HSMMtube	muscle
13	chr7:129305000-129338200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr7:129305400-129315000	Weak transcription	HUVEC	blood vessel
15	chr7:129305400-129315000	Weak transcription	NHDF-Ad	bronchial
16	chr7:129307200-129352000	Weak transcription	NHLF	lung
17	chr7:129309600-129314800	Strong transcription	Primary T cells from cord blood	blood
18	chr7:129310200-129315000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr7:129310600-129316000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr7:129310600-129319200	Strong transcription	HUES48 Cell Line	embryonic stem cell
21	chr7:129311000-129315000	Strong transcription	HUES64 Cell Line	embryonic stem cell
22	chr7:129311000-129315000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr7:129311000-129316400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr7:129311000-129319400	Strong transcription	Primary B cells from peripheral blood	blood
25	chr7:129311200-129314400	Strong transcription	Fetal Stomach	stomach
26	chr7:129311200-129314400	Strong transcription	Right Ventricle	heart
27	chr7:129311200-129314600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
28	chr7:129311200-129314800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr7:129311200-129314800	Strong transcription	Liver	Liver
30	chr7:129311200-129314800	Strong transcription	Duodenum Mucosa	Duodenum
31	chr7:129311200-129315000	Strong transcription	Primary neutrophils fromperipheralblood	blood
32	chr7:129311200-129315000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr7:129311200-129315000	Strong transcription	Brain Hippocampus Middle	brain
34	chr7:129311200-129315000	Strong transcription	Duodenum Smooth Muscle	Duodenum
35	chr7:129311200-129315000	Weak transcription	Fetal Heart	heart
36	chr7:129311200-129315200	Strong transcription	A549	lung
37	chr7:129311200-129315400	Strong transcription	HepG2	liver
38	chr7:129311200-129315400	Strong transcription	HSMM	muscle
39	chr7:129311200-129316200	Strong transcription	Primary T helper cells PMA-I stimulated	--
40	chr7:129311200-129316200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr7:129311200-129316200	Strong transcription	Skeletal Muscle Male	skeletal muscle
42	chr7:129311200-129316400	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr7:129311200-129316600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
44	chr7:129311200-129317800	Strong transcription	Lung	lung
45	chr7:129311200-129318000	Strong transcription	HUES6 Cell Line	embryonic stem cell
46	chr7:129311200-129319000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
47	chr7:129311200-129319000	Strong transcription	Rectal Mucosa Donor 29	rectum
48	chr7:129311200-129322600	Strong transcription	Fetal Thymus	thymus
49	chr7:129311400-129314600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
50	chr7:129311400-129314800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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