Variant report

Variant	rs10270813
Chromosome Location	chr7:129256285-129256286
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:3)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:3 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr7:129256195-129256338	ProgFib	skin:	n/a	n/a
2	TEAD4	chr7:129256252-129256827	K562	blood:	n/a	n/a
3	WRNIP1	chr7:129256112-129256659	GM12878	blood:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:129255097..129256981-chr7:129420268..129421887,2	MCF-7	breast:
2	chr7:129255243..129257126-chr7:129262602..129264612,2	MCF-7	breast:
3	chr7:129253872..129256640-chr7:129267800..129269342,2	MCF-7	breast:
4	chr7:129228150..129230324-chr7:129254634..129257789,3	MCF-7	breast:
5	chr7:129217791..129220404-chr7:129255943..129258228,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000273329	TF binding region

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10236959	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10255458	0.82[EUR][1000 genomes]
rs10268760	0.83[EUR][1000 genomes]
rs10279858	0.82[EUR][1000 genomes]
rs10808237	0.84[EUR][1000 genomes]
rs10954247	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1882094	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4272311	0.86[ASN][1000 genomes]
rs62489295	0.87[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6946418	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7778681	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7782520	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9656383	0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:129252800-129285800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr7:129253000-129259000	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr7:129253000-129260200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
4	chr7:129253000-129262400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr7:129253000-129262400	Weak transcription	Ovary	ovary
6	chr7:129253000-129297200	Weak transcription	Lung	lung
7	chr7:129253200-129256400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr7:129253200-129257200	Weak transcription	Psoas Muscle	Psoas
9	chr7:129253200-129257200	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr7:129253200-129257400	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr7:129253200-129257400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr7:129253200-129257600	Weak transcription	Right Atrium	heart
13	chr7:129253200-129257800	Enhancers	Primary hematopoietic stem cells	blood
14	chr7:129253200-129258400	Enhancers	Primary T killer memory cells from peripheral blood	blood
15	chr7:129253200-129258800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr7:129253200-129259000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
17	chr7:129253200-129259400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
18	chr7:129253200-129260200	Enhancers	Primary T helper naive cells from peripheral blood	blood
19	chr7:129253200-129260200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
20	chr7:129253200-129262200	Weak transcription	NH-A	brain
21	chr7:129253200-129267200	Weak transcription	Spleen	Spleen
22	chr7:129253200-129269800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr7:129253200-129278200	Weak transcription	Right Ventricle	heart
24	chr7:129253200-129283200	Weak transcription	HSMM	muscle
25	chr7:129253400-129256400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
26	chr7:129253400-129256400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr7:129253400-129256400	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr7:129253400-129256400	Enhancers	Monocytes-CD14+_RO01746	blood
29	chr7:129253400-129256600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
30	chr7:129253400-129257400	Weak transcription	Rectal Smooth Muscle	rectum
31	chr7:129253400-129257600	Enhancers	A549	lung
32	chr7:129253400-129258000	Enhancers	Primary hematopoietic stem cells short term culture	blood
33	chr7:129253400-129258400	Enhancers	Primary B cells from cord blood	blood
34	chr7:129253400-129258600	Enhancers	Primary T cells from cord blood	blood
35	chr7:129253400-129259800	Weak transcription	Pancreatic Islets	Pancreatic Islet
36	chr7:129253400-129260400	Enhancers	Primary T helper cells PMA-I stimulated	--
37	chr7:129253400-129264200	Enhancers	Primary T helper cells fromperipheralblood	blood
38	chr7:129253400-129271200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr7:129253400-129275400	Weak transcription	Brain Cingulate Gyrus	brain
40	chr7:129253400-129281800	Weak transcription	Stomach Mucosa	stomach
41	chr7:129253600-129256400	Weak transcription	Liver	Liver
42	chr7:129253800-129256600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr7:129253800-129267400	Weak transcription	Fetal Muscle Trunk	muscle
44	chr7:129253800-129297200	Weak transcription	Fetal Stomach	stomach
45	chr7:129254200-129256600	Weak transcription	Brain Germinal Matrix	brain
46	chr7:129254400-129257000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr7:129254400-129257600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr7:129254400-129258200	Enhancers	Brain Angular Gyrus	brain
49	chr7:129254400-129259000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
50	chr7:129254600-129256600	Enhancers	HMEC	breast

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