Variant report

Variant	rs10279858
Chromosome Location	chr7:129258671-129258672
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:129258265..129261102-chr7:129275466..129276981,2	K562	blood:
2	chr7:129256509..129259242-chr7:129259807..129261335,2	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10236959	0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10255458	0.82[ASN][1000 genomes]
rs10268760	0.82[ASN][1000 genomes]
rs10270813	0.82[EUR][1000 genomes]
rs12666331	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2001583	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4728174	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6957596	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6958375	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6969441	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7781972	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7799770	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:129252800-129285800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr7:129253000-129259000	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr7:129253000-129260200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
4	chr7:129253000-129262400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr7:129253000-129262400	Weak transcription	Ovary	ovary
6	chr7:129253000-129297200	Weak transcription	Lung	lung
7	chr7:129253200-129258800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr7:129253200-129259000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
9	chr7:129253200-129259400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
10	chr7:129253200-129260200	Enhancers	Primary T helper naive cells from peripheral blood	blood
11	chr7:129253200-129260200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
12	chr7:129253200-129262200	Weak transcription	NH-A	brain
13	chr7:129253200-129267200	Weak transcription	Spleen	Spleen
14	chr7:129253200-129269800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr7:129253200-129278200	Weak transcription	Right Ventricle	heart
16	chr7:129253200-129283200	Weak transcription	HSMM	muscle
17	chr7:129253400-129259800	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr7:129253400-129260400	Enhancers	Primary T helper cells PMA-I stimulated	--
19	chr7:129253400-129264200	Enhancers	Primary T helper cells fromperipheralblood	blood
20	chr7:129253400-129271200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr7:129253400-129275400	Weak transcription	Brain Cingulate Gyrus	brain
22	chr7:129253400-129281800	Weak transcription	Stomach Mucosa	stomach
23	chr7:129253800-129267400	Weak transcription	Fetal Muscle Trunk	muscle
24	chr7:129253800-129297200	Weak transcription	Fetal Stomach	stomach
25	chr7:129254400-129259000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
26	chr7:129254600-129267000	Weak transcription	Fetal Brain Female	brain
27	chr7:129255200-129259600	Weak transcription	Fetal Intestine Small	intestine
28	chr7:129255200-129260200	Enhancers	HepG2	liver
29	chr7:129255200-129275200	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr7:129255200-129286200	Weak transcription	Hela-S3	cervix
31	chr7:129255400-129267000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr7:129255600-129263000	Weak transcription	Fetal Heart	heart
33	chr7:129255600-129269000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr7:129255600-129278000	Weak transcription	Fetal Lung	lung
35	chr7:129255800-129259400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr7:129256400-129267600	Weak transcription	Rectal Mucosa Donor 29	rectum
37	chr7:129256400-129274600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr7:129256600-129261600	Weak transcription	Left Ventricle	heart
39	chr7:129256600-129262400	Weak transcription	Pancreas	Pancrea
40	chr7:129256600-129265800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr7:129256600-129267200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr7:129256600-129269400	Weak transcription	Primary B cells from peripheral blood	blood
43	chr7:129256600-129283400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr7:129256600-129284400	Weak transcription	HMEC	breast
45	chr7:129256600-129286600	Weak transcription	Thymus	Thymus
46	chr7:129256800-129264600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
47	chr7:129257200-129266000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
48	chr7:129257400-129259000	Enhancers	Sigmoid Colon	Sigmoid Colon
49	chr7:129257400-129259200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
50	chr7:129257400-129259400	Weak transcription	Small Intestine	intestine

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