Variant report

Variant	rs7799770
Chromosome Location	chr7:129268029-129268030
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:129253872..129256640-chr7:129267800..129269342,2	MCF-7	breast:
2	chr7:129267049..129269797-chr7:129273432..129275220,2	K562	blood:
3	chr7:129251593..129253816-chr7:129265350..129268702,3	K562	blood:
4	chr7:129251382..129253587-chr7:129267394..129269728,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000106459	Chromatin interaction
ENSG00000273329	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10236959	0.82[AMR][1000 genomes]
rs10279858	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12666331	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2001583	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4728174	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6957596	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6958375	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6969441	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7781972	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:129252800-129285800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr7:129253000-129297200	Weak transcription	Lung	lung
3	chr7:129253200-129269800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr7:129253200-129278200	Weak transcription	Right Ventricle	heart
5	chr7:129253200-129283200	Weak transcription	HSMM	muscle
6	chr7:129253400-129271200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr7:129253400-129275400	Weak transcription	Brain Cingulate Gyrus	brain
8	chr7:129253400-129281800	Weak transcription	Stomach Mucosa	stomach
9	chr7:129253800-129297200	Weak transcription	Fetal Stomach	stomach
10	chr7:129255200-129275200	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr7:129255200-129286200	Weak transcription	Hela-S3	cervix
12	chr7:129255600-129269000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr7:129255600-129278000	Weak transcription	Fetal Lung	lung
14	chr7:129256400-129274600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr7:129256600-129269400	Weak transcription	Primary B cells from peripheral blood	blood
16	chr7:129256600-129283400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr7:129256600-129284400	Weak transcription	HMEC	breast
18	chr7:129256600-129286600	Weak transcription	Thymus	Thymus
19	chr7:129257600-129269800	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr7:129257600-129274400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr7:129257600-129282800	Weak transcription	Osteobl	bone
22	chr7:129257600-129288400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr7:129257800-129273000	Weak transcription	Brain Germinal Matrix	brain
24	chr7:129257800-129289000	Weak transcription	NHEK	skin
25	chr7:129257800-129297000	Weak transcription	Primary hematopoietic stem cells	blood
26	chr7:129257800-129297000	Weak transcription	Fetal Intestine Large	intestine
27	chr7:129257800-129297200	Weak transcription	Aorta	Aorta
28	chr7:129258400-129272600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr7:129258400-129283000	Weak transcription	Fetal Thymus	thymus
30	chr7:129258600-129271400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr7:129259000-129269800	Weak transcription	Primary monocytes fromperipheralblood	blood
32	chr7:129259000-129296800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
33	chr7:129259200-129286200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr7:129260200-129269800	Weak transcription	A549	lung
35	chr7:129260200-129273000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
36	chr7:129260200-129297200	Weak transcription	Fetal Intestine Small	intestine
37	chr7:129260400-129274600	Weak transcription	Liver	Liver
38	chr7:129262800-129297000	Weak transcription	Primary T cells fromperipheralblood	blood
39	chr7:129263000-129269800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr7:129263200-129272600	Weak transcription	Primary T cells from cord blood	blood
41	chr7:129263600-129275200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
42	chr7:129265000-129275000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr7:129265200-129269800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr7:129265200-129274600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr7:129265200-129297200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
46	chr7:129266000-129270200	Enhancers	Primary T helper cells PMA-I stimulated	--
47	chr7:129266600-129268600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
48	chr7:129266600-129269600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr7:129266800-129269800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
50	chr7:129267000-129275200	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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