Variant report

Variant	rs10236959
Chromosome Location	chr7:129255110-129255111
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:36)
CpG islands
(count:0)
Chromatin interactive
region (count:3)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:36 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	WRNIP1	chr7:129254991-129255229	GM12878	blood:	n/a	n/a
2	CEBPB	chr7:129254918-129255246	HepG2	liver:	n/a	n/a
3	CEBPB	chr7:129254894-129255262	IMR90	lung:	n/a	n/a
4	FOXA1	chr7:129254756-129255251	HepG2	liver:	n/a	n/a
5	NFIC	chr7:129254843-129255317	GM12878	blood:	n/a	n/a
6	FOXA2	chr7:129254899-129255205	HepG2	liver:	n/a	n/a
7	FOS	chr7:129254968-129255187	MCF10A-Er-Src	breast:	n/a	n/a
8	FOS	chr7:129254922-129255263	MCF10A-Er-Src	breast:	n/a	n/a
9	EBF1	chr7:129254932-129255241	GM12878	blood:	n/a	n/a
10	CEBPB	chr7:129254950-129255201	K562	blood:	n/a	n/a
11	FOXA1	chr7:129254909-129255201	HepG2	liver:	n/a	n/a
12	MYC	chr7:129254866-129255233	NB4	blood:	n/a	n/a
13	MYC	chr7:129254897-129255110	MCF10A-Er-Src	breast:	n/a	n/a
14	FOS	chr7:129254898-129255262	MCF10A-Er-Src	breast:	n/a	n/a
15	MXI1	chr7:129254954-129255169	HepG2	liver:	n/a	n/a
16	EP300	chr7:129254885-129255230	HepG2	liver:	n/a	chr7:129255020-129255029
17	MAFK	chr7:129255050-129255216	HepG2	liver:	n/a	n/a
18	RUNX3	chr7:129254804-129255323	GM12878	blood:	n/a	n/a
19	RUNX3	chr7:129254904-129255274	GM12878	blood:	n/a	n/a
20	ARID3A	chr7:129254712-129255198	HepG2	liver:	n/a	n/a
21	CHD1	chr7:129254994-129255185	GM12878	blood:	n/a	n/a
22	CEBPD	chr7:129254992-129255242	HepG2	liver:	n/a	n/a
23	MAX	chr7:129254856-129255264	NB4	blood:	n/a	n/a
24	SMC3	chr7:129255075-129255137	GM12878	blood:	n/a	n/a
25	POLR2A	chr7:129254829-129255146	MCF10A-Er-Src	breast:	n/a	n/a
26	HDAC2	chr7:129254870-129255207	HepG2	liver:	n/a	n/a
27	CEBPB	chr7:129254957-129255139	HepG2	liver:	n/a	n/a
28	FOS	chr7:129254959-129255230	MCF10A-Er-Src	breast:	n/a	n/a
29	STAT3	chr7:129254976-129255158	MCF10A-Er-Src	breast:	n/a	n/a
30	MXI1	chr7:129254627-129255189	GM12878	blood:	n/a	n/a
31	POLR2A	chr7:129255037-129255237	MCF10A-Er-Src	breast:	n/a	n/a
32	EP300	chr7:129254968-129255184	HepG2	liver:	n/a	chr7:129255020-129255029
33	ZNF143	chr7:129255001-129255207	GM12878	blood:	n/a	n/a
34	CEBPB	chr7:129254909-129255258	HepG2	liver:	n/a	n/a
35	EP300	chr7:129254916-129255177	GM12878	blood:	n/a	chr7:129255020-129255029
36	MAFK	chr7:129254909-129255202	HepG2	liver:	n/a	n/a

No data

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:129255097..129256981-chr7:129420268..129421887,2	MCF-7	breast:
2	chr7:129253872..129256640-chr7:129267800..129269342,2	MCF-7	breast:
3	chr7:129228150..129230324-chr7:129254634..129257789,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000273329	TF binding region

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10255458	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10268760	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10270813	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10279858	0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10808237	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10954247	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1882094	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2001583	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs4272311	0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs62489295	0.88[ASN][1000 genomes]
rs6946418	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7778681	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7781972	0.94[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs7782520	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7799770	0.82[AMR][1000 genomes]
rs9656383	0.83[ASN][1000 genomes]

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:129252800-129285800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr7:129253000-129255200	Enhancers	Primary T cells fromperipheralblood	blood
3	chr7:129253000-129255200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
4	chr7:129253000-129256200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr7:129253000-129256200	Weak transcription	Aorta	Aorta
6	chr7:129253000-129259000	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr7:129253000-129260200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
8	chr7:129253000-129262400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr7:129253000-129262400	Weak transcription	Ovary	ovary
10	chr7:129253000-129297200	Weak transcription	Lung	lung
11	chr7:129253200-129255200	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr7:129253200-129255200	Enhancers	Fetal Intestine Large	intestine
13	chr7:129253200-129255400	Enhancers	Fetal Thymus	thymus
14	chr7:129253200-129255600	Enhancers	Primary B cells from peripheral blood	blood
15	chr7:129253200-129255600	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr7:129253200-129255800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr7:129253200-129256200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr7:129253200-129256200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr7:129253200-129256200	Enhancers	Primary neutrophils fromperipheralblood	blood
20	chr7:129253200-129256200	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr7:129253200-129256200	Weak transcription	Pancreas	Pancrea
22	chr7:129253200-129256400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr7:129253200-129257200	Weak transcription	Psoas Muscle	Psoas
24	chr7:129253200-129257200	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr7:129253200-129257400	Enhancers	HUES64 Cell Line	embryonic stem cell
26	chr7:129253200-129257400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr7:129253200-129257600	Weak transcription	Right Atrium	heart
28	chr7:129253200-129257800	Enhancers	Primary hematopoietic stem cells	blood
29	chr7:129253200-129258400	Enhancers	Primary T killer memory cells from peripheral blood	blood
30	chr7:129253200-129258800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr7:129253200-129259000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
32	chr7:129253200-129259400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
33	chr7:129253200-129260200	Enhancers	Primary T helper naive cells from peripheral blood	blood
34	chr7:129253200-129260200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
35	chr7:129253200-129262200	Weak transcription	NH-A	brain
36	chr7:129253200-129267200	Weak transcription	Spleen	Spleen
37	chr7:129253200-129269800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
38	chr7:129253200-129278200	Weak transcription	Right Ventricle	heart
39	chr7:129253200-129283200	Weak transcription	HSMM	muscle
40	chr7:129253400-129255200	Enhancers	Brain Anterior Caudate	brain
41	chr7:129253400-129255200	Enhancers	Duodenum Mucosa	Duodenum
42	chr7:129253400-129255200	Enhancers	Thymus	Thymus
43	chr7:129253400-129255400	Enhancers	K562	blood
44	chr7:129253400-129255600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr7:129253400-129255600	Weak transcription	Rectal Mucosa Donor 29	rectum
46	chr7:129253400-129256400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
47	chr7:129253400-129256400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr7:129253400-129256400	Weak transcription	Skeletal Muscle Female	skeletal muscle
49	chr7:129253400-129256400	Enhancers	Monocytes-CD14+_RO01746	blood
50	chr7:129253400-129256600	Enhancers	Primary T regulatory cells fromperipheralblood	blood

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