Variant report

Variant	rs2001583
Chromosome Location	chr7:129263397-129263398
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:129262011..129265205-chr7:129267013..129271512,6	MCF-7	breast:
2	chr7:129249873..129252344-chr7:129262595..129264304,2	MCF-7	breast:
3	chr7:129263344..129266051-chr7:129271795..129274722,2	MCF-7	breast:
4	chr7:129255243..129257126-chr7:129262602..129264612,2	MCF-7	breast:
5	chr7:129259268..129262342-chr7:129262856..129266141,3	MCF-7	breast:
6	chr7:129262066..129264067-chr7:129418277..129420073,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000273329	Chromatin interaction
ENSG00000106459	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10236959	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs10279858	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12666331	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1882094	0.81[AMR][1000 genomes]
rs4728174	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6946418	0.81[AMR][1000 genomes]
rs6957596	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6958375	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6969441	0.87[CEU][hapmap];0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7778681	0.81[AMR][1000 genomes]
rs7781972	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7782520	0.80[AMR][1000 genomes]
rs7799770	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:129252800-129285800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr7:129253000-129297200	Weak transcription	Lung	lung
3	chr7:129253200-129267200	Weak transcription	Spleen	Spleen
4	chr7:129253200-129269800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr7:129253200-129278200	Weak transcription	Right Ventricle	heart
6	chr7:129253200-129283200	Weak transcription	HSMM	muscle
7	chr7:129253400-129264200	Enhancers	Primary T helper cells fromperipheralblood	blood
8	chr7:129253400-129271200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr7:129253400-129275400	Weak transcription	Brain Cingulate Gyrus	brain
10	chr7:129253400-129281800	Weak transcription	Stomach Mucosa	stomach
11	chr7:129253800-129267400	Weak transcription	Fetal Muscle Trunk	muscle
12	chr7:129253800-129297200	Weak transcription	Fetal Stomach	stomach
13	chr7:129254600-129267000	Weak transcription	Fetal Brain Female	brain
14	chr7:129255200-129275200	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr7:129255200-129286200	Weak transcription	Hela-S3	cervix
16	chr7:129255400-129267000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr7:129255600-129269000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr7:129255600-129278000	Weak transcription	Fetal Lung	lung
19	chr7:129256400-129267600	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr7:129256400-129274600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr7:129256600-129265800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr7:129256600-129267200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr7:129256600-129269400	Weak transcription	Primary B cells from peripheral blood	blood
24	chr7:129256600-129283400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr7:129256600-129284400	Weak transcription	HMEC	breast
26	chr7:129256600-129286600	Weak transcription	Thymus	Thymus
27	chr7:129256800-129264600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
28	chr7:129257200-129266000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
29	chr7:129257600-129263800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr7:129257600-129269800	Weak transcription	HUES6 Cell Line	embryonic stem cell
31	chr7:129257600-129274400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr7:129257600-129282800	Weak transcription	Osteobl	bone
33	chr7:129257600-129288400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr7:129257800-129263800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr7:129257800-129266800	Weak transcription	Adipose Nuclei	Adipose
36	chr7:129257800-129267800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr7:129257800-129273000	Weak transcription	Brain Germinal Matrix	brain
38	chr7:129257800-129289000	Weak transcription	NHEK	skin
39	chr7:129257800-129297000	Weak transcription	Primary hematopoietic stem cells	blood
40	chr7:129257800-129297000	Weak transcription	Fetal Intestine Large	intestine
41	chr7:129257800-129297200	Weak transcription	Aorta	Aorta
42	chr7:129258400-129265800	Weak transcription	Psoas Muscle	Psoas
43	chr7:129258400-129272600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr7:129258400-129283000	Weak transcription	Fetal Thymus	thymus
45	chr7:129258600-129271400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
46	chr7:129258800-129263800	Weak transcription	Monocytes-CD14+_RO01746	blood
47	chr7:129258800-129266800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr7:129259000-129269800	Weak transcription	Primary monocytes fromperipheralblood	blood
49	chr7:129259000-129296800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
50	chr7:129259200-129286200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

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