Variant report

Variant	rs7781972
Chromosome Location	chr7:129259792-129259793
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:129259213..129260936-chr7:129285295..129288130,2	MCF-7	breast:
2	chr7:129259268..129262342-chr7:129262856..129266141,3	MCF-7	breast:
3	chr7:129258265..129261102-chr7:129275466..129276981,2	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10236959	0.94[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs10279858	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12666331	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1882094	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs2001583	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4728174	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6946418	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs6957596	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6958375	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6969441	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7778681	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs7782520	0.80[AFR][1000 genomes]
rs7799770	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:129252800-129285800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr7:129253000-129260200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
3	chr7:129253000-129262400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr7:129253000-129262400	Weak transcription	Ovary	ovary
5	chr7:129253000-129297200	Weak transcription	Lung	lung
6	chr7:129253200-129260200	Enhancers	Primary T helper naive cells from peripheral blood	blood
7	chr7:129253200-129260200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
8	chr7:129253200-129262200	Weak transcription	NH-A	brain
9	chr7:129253200-129267200	Weak transcription	Spleen	Spleen
10	chr7:129253200-129269800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr7:129253200-129278200	Weak transcription	Right Ventricle	heart
12	chr7:129253200-129283200	Weak transcription	HSMM	muscle
13	chr7:129253400-129259800	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr7:129253400-129260400	Enhancers	Primary T helper cells PMA-I stimulated	--
15	chr7:129253400-129264200	Enhancers	Primary T helper cells fromperipheralblood	blood
16	chr7:129253400-129271200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr7:129253400-129275400	Weak transcription	Brain Cingulate Gyrus	brain
18	chr7:129253400-129281800	Weak transcription	Stomach Mucosa	stomach
19	chr7:129253800-129267400	Weak transcription	Fetal Muscle Trunk	muscle
20	chr7:129253800-129297200	Weak transcription	Fetal Stomach	stomach
21	chr7:129254600-129267000	Weak transcription	Fetal Brain Female	brain
22	chr7:129255200-129260200	Enhancers	HepG2	liver
23	chr7:129255200-129275200	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr7:129255200-129286200	Weak transcription	Hela-S3	cervix
25	chr7:129255400-129267000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr7:129255600-129263000	Weak transcription	Fetal Heart	heart
27	chr7:129255600-129269000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr7:129255600-129278000	Weak transcription	Fetal Lung	lung
29	chr7:129256400-129267600	Weak transcription	Rectal Mucosa Donor 29	rectum
30	chr7:129256400-129274600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr7:129256600-129261600	Weak transcription	Left Ventricle	heart
32	chr7:129256600-129262400	Weak transcription	Pancreas	Pancrea
33	chr7:129256600-129265800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr7:129256600-129267200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr7:129256600-129269400	Weak transcription	Primary B cells from peripheral blood	blood
36	chr7:129256600-129283400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr7:129256600-129284400	Weak transcription	HMEC	breast
38	chr7:129256600-129286600	Weak transcription	Thymus	Thymus
39	chr7:129256800-129264600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
40	chr7:129257200-129266000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
41	chr7:129257400-129262600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr7:129257600-129263800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr7:129257600-129269800	Weak transcription	HUES6 Cell Line	embryonic stem cell
44	chr7:129257600-129274400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr7:129257600-129282800	Weak transcription	Osteobl	bone
46	chr7:129257600-129288400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr7:129257800-129260200	Weak transcription	NHLF	lung
48	chr7:129257800-129262800	Enhancers	Primary neutrophils fromperipheralblood	blood
49	chr7:129257800-129263000	Weak transcription	Brain Anterior Caudate	brain
50	chr7:129257800-129263800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links