Variant report

Variant	rs4731621
Chromosome Location	chr7:129374657-129374658
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:129374523..129378775-chr7:129380102..129386585,8	K562	blood:
2	chr7:129373344..129375682-chr7:129387630..129389777,2	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10215964	1.00[CHB][hapmap];0.88[CHD][hapmap]
rs10245497	0.86[CHB][hapmap];0.87[CHD][hapmap]
rs10255077	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10275592	1.00[CHB][hapmap];0.88[CHD][hapmap]
rs10808240	1.00[CHB][hapmap]
rs1450878	0.86[CHB][hapmap];0.87[CHD][hapmap]
rs1562833	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs1962039	0.80[YRI][hapmap]
rs2402966	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2402968	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs2402969	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2402972	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2402978	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2896422	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2896423	1.00[CEU][hapmap];1.00[CHB][hapmap];0.80[YRI][hapmap];0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3778775	0.80[YRI][hapmap]
rs4292630	1.00[CHB][hapmap]
rs4728171	0.85[CHB][hapmap]
rs4728177	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4731608	1.00[CHB][hapmap]
rs4731612	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4731617	0.80[YRI][hapmap]
rs58736446	1.00[ASN][1000 genomes]
rs6467255	0.86[CHB][hapmap]
rs6467257	1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap]
rs6467262	0.84[AFR][1000 genomes]
rs6949469	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6949742	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6958958	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.80[YRI][hapmap];0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6967348	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs7778085	1.00[CHB][hapmap]
rs7794909	1.00[CEU][hapmap];0.88[CHB][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7801252	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7802940	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.80[YRI][hapmap];0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7805465	1.00[CHB][hapmap]
rs7809459	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9641854	0.82[YRI][hapmap]
rs9641855	0.82[YRI][hapmap]
rs9792084	1.00[CHB][hapmap];0.88[CHD][hapmap]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:129319000-129380000	Weak transcription	NHDF-Ad	bronchial
2	chr7:129339200-129381800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr7:129343200-129379600	Weak transcription	Stomach Mucosa	stomach
4	chr7:129348200-129375600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr7:129348200-129392000	Strong transcription	Primary T helper cells fromperipheralblood	blood
6	chr7:129348600-129375200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr7:129348600-129375800	Strong transcription	Primary T cells fromperipheralblood	blood
8	chr7:129351600-129394800	Weak transcription	Hela-S3	cervix
9	chr7:129355200-129380600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr7:129357000-129392400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
11	chr7:129357400-129378400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr7:129358800-129376800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr7:129360600-129394800	Weak transcription	Small Intestine	intestine
14	chr7:129361800-129392400	Strong transcription	Monocytes-CD14+_RO01746	blood
15	chr7:129362200-129374800	Strong transcription	HUES48 Cell Line	embryonic stem cell
16	chr7:129362200-129375000	Strong transcription	Primary T cells from cord blood	blood
17	chr7:129362200-129376000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr7:129362200-129379000	Strong transcription	Placenta	Placenta
19	chr7:129362200-129380600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr7:129362200-129381200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr7:129362200-129387800	Strong transcription	Liver	Liver
22	chr7:129362400-129375200	Strong transcription	Primary B cells from peripheral blood	blood
23	chr7:129364200-129397600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
24	chr7:129364400-129375800	Strong transcription	Thymus	Thymus
25	chr7:129365200-129388400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr7:129366600-129375600	Strong transcription	HUES64 Cell Line	embryonic stem cell
27	chr7:129366800-129375000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
28	chr7:129366800-129399400	Weak transcription	Fetal Kidney	kidney
29	chr7:129367600-129379200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
30	chr7:129367800-129379400	Weak transcription	Pancreas	Pancrea
31	chr7:129368200-129378400	Weak transcription	Pancreatic Islets	Pancreatic Islet
32	chr7:129369000-129375200	Strong transcription	Fetal Intestine Large	intestine
33	chr7:129369200-129380600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr7:129369400-129378200	Weak transcription	Colon Smooth Muscle	Colon
35	chr7:129369400-129378600	Weak transcription	Right Ventricle	heart
36	chr7:129369400-129379400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr7:129369400-129379600	Weak transcription	Right Atrium	heart
38	chr7:129369600-129376800	Weak transcription	Rectal Mucosa Donor 31	rectum
39	chr7:129369600-129380400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr7:129369600-129399400	Weak transcription	Fetal Brain Male	brain
41	chr7:129369800-129375800	Strong transcription	Fetal Intestine Small	intestine
42	chr7:129369800-129376800	Weak transcription	Fetal Heart	heart
43	chr7:129370800-129377000	Weak transcription	Primary hematopoietic stem cells	blood
44	chr7:129371400-129375000	Strong transcription	Rectal Mucosa Donor 29	rectum
45	chr7:129371400-129378200	Weak transcription	HUVEC	blood vessel
46	chr7:129372000-129381000	Weak transcription	H9 Cell Line	embryonic stem cell
47	chr7:129372000-129383400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
48	chr7:129372000-129390000	Weak transcription	HMEC	breast
49	chr7:129372200-129376600	Weak transcription	Brain Substantia Nigra	brain
50	chr7:129372200-129381000	Weak transcription	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links