Variant report

Variant	rs2402969
Chromosome Location	chr7:129378189-129378190
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:129374523..129378775-chr7:129380102..129386585,8	K562	blood:
2	chr7:129376991..129379379-chr7:129400129..129402953,2	K562	blood:
3	chr7:129376991..129379668-chr7:129401453..129404234,2	K562	blood:
4	chr7:129377464..129380811-chr7:129382602..129385925,4	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10215964	1.00[CHB][hapmap]
rs10245497	0.86[CHB][hapmap]
rs10255077	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10275592	1.00[CHB][hapmap]
rs10808240	1.00[CHB][hapmap]
rs1450878	0.86[CHB][hapmap]
rs1562833	1.00[CHB][hapmap]
rs2402966	1.00[CHB][hapmap]
rs2402968	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs2402972	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2402978	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2896422	1.00[CHB][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2896423	1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4292630	1.00[CHB][hapmap]
rs4728171	0.85[CHB][hapmap]
rs4728177	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4731608	1.00[CHB][hapmap];0.83[YRI][hapmap]
rs4731612	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4731621	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58736446	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6467255	0.86[CHB][hapmap]
rs6467257	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6949469	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6949742	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6958958	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6967348	1.00[CHB][hapmap]
rs7778085	1.00[CHB][hapmap]
rs7794909	0.88[CHB][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7801252	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7802940	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7805465	1.00[CHB][hapmap]
rs7809459	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9792084	1.00[CHB][hapmap]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:129319000-129380000	Weak transcription	NHDF-Ad	bronchial
2	chr7:129339200-129381800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr7:129343200-129379600	Weak transcription	Stomach Mucosa	stomach
4	chr7:129348200-129392000	Strong transcription	Primary T helper cells fromperipheralblood	blood
5	chr7:129351600-129394800	Weak transcription	Hela-S3	cervix
6	chr7:129355200-129380600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr7:129357000-129392400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
8	chr7:129357400-129378400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr7:129360600-129394800	Weak transcription	Small Intestine	intestine
10	chr7:129361800-129392400	Strong transcription	Monocytes-CD14+_RO01746	blood
11	chr7:129362200-129379000	Strong transcription	Placenta	Placenta
12	chr7:129362200-129380600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr7:129362200-129381200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr7:129362200-129387800	Strong transcription	Liver	Liver
15	chr7:129364200-129397600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr7:129365200-129388400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr7:129366800-129399400	Weak transcription	Fetal Kidney	kidney
18	chr7:129367600-129379200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr7:129367800-129379400	Weak transcription	Pancreas	Pancrea
20	chr7:129368200-129378400	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr7:129369200-129380600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr7:129369400-129378200	Weak transcription	Colon Smooth Muscle	Colon
23	chr7:129369400-129378600	Weak transcription	Right Ventricle	heart
24	chr7:129369400-129379400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr7:129369400-129379600	Weak transcription	Right Atrium	heart
26	chr7:129369600-129380400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr7:129369600-129399400	Weak transcription	Fetal Brain Male	brain
28	chr7:129371400-129378200	Weak transcription	HUVEC	blood vessel
29	chr7:129372000-129381000	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr7:129372000-129383400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
31	chr7:129372000-129390000	Weak transcription	HMEC	breast
32	chr7:129372200-129381000	Weak transcription	HepG2	liver
33	chr7:129372200-129381600	Weak transcription	Fetal Brain Female	brain
34	chr7:129372200-129387000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr7:129372200-129390000	Weak transcription	NHEK	skin
36	chr7:129372200-129397800	Weak transcription	NH-A	brain
37	chr7:129372400-129379000	Weak transcription	K562	blood
38	chr7:129372400-129398800	Weak transcription	NHLF	lung
39	chr7:129373200-129381000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr7:129373400-129378800	Strong transcription	Adipose Nuclei	Adipose
41	chr7:129373400-129389200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
42	chr7:129373600-129381000	Strong transcription	Fetal Muscle Trunk	muscle
43	chr7:129373600-129385600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr7:129373800-129385200	Strong transcription	Duodenum Mucosa	Duodenum
45	chr7:129373800-129392000	Strong transcription	Primary monocytes fromperipheralblood	blood
46	chr7:129374400-129378600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr7:129374400-129380800	Weak transcription	Osteobl	bone
48	chr7:129374600-129394800	Weak transcription	Gastric	stomach
49	chr7:129374800-129378400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
50	chr7:129374800-129378800	Weak transcription	Brain Anterior Caudate	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links