Variant report

Variant	rs2402968
Chromosome Location	chr7:129321647-129321648
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:129321375..129324178-chr7:129328402..129330581,2	K562	blood:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10215964	1.00[CHB][hapmap];0.87[YRI][hapmap];0.86[ASN][1000 genomes]
rs10245497	0.86[CHB][hapmap]
rs10249998	0.93[ASN][1000 genomes]
rs10252513	0.82[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs10255077	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs10275592	1.00[CHB][hapmap];0.86[YRI][hapmap];0.86[ASN][1000 genomes]
rs10279839	0.93[ASN][1000 genomes]
rs10808240	1.00[CHB][hapmap];0.86[YRI][hapmap];0.82[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs1450878	0.86[CHB][hapmap]
rs1562833	1.00[CHB][hapmap];0.87[YRI][hapmap];0.86[ASN][1000 genomes]
rs1882094	1.00[YRI][hapmap]
rs2402965	0.93[ASN][1000 genomes]
rs2402966	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[ASN][1000 genomes]
rs2402969	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs2402972	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs2896422	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs2896423	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs4292630	1.00[CHB][hapmap];0.93[ASN][1000 genomes]
rs4348430	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4728171	0.85[CHB][hapmap]
rs4728177	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.82[ASN][1000 genomes]
rs4731607	0.93[ASN][1000 genomes]
rs4731608	1.00[CHB][hapmap];0.93[ASN][1000 genomes]
rs4731612	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4731621	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs58736446	0.82[ASN][1000 genomes]
rs6467255	0.86[CHB][hapmap]
rs6467257	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6946418	1.00[YRI][hapmap]
rs6958958	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs6961102	0.86[ASN][1000 genomes]
rs6967348	1.00[CHB][hapmap];0.87[YRI][hapmap];0.86[ASN][1000 genomes]
rs6969441	1.00[YRI][hapmap]
rs7778085	1.00[CHB][hapmap];1.00[YRI][hapmap];0.93[ASN][1000 genomes]
rs7786760	0.93[ASN][1000 genomes]
rs7788849	0.90[ASN][1000 genomes]
rs7794909	0.88[CHB][hapmap];0.82[ASN][1000 genomes]
rs7799885	0.93[ASN][1000 genomes]
rs7801252	0.82[ASN][1000 genomes]
rs7802940	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs7803431	0.82[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs7805465	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs7809459	0.82[ASN][1000 genomes]
rs9792084	1.00[CHB][hapmap];0.81[YRI][hapmap];0.86[ASN][1000 genomes]

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:129283800-129331600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr7:129290000-129325800	Weak transcription	Stomach Mucosa	stomach
3	chr7:129297800-129349800	Weak transcription	Small Intestine	intestine
4	chr7:129301000-129330200	Weak transcription	Gastric	stomach
5	chr7:129302000-129331800	Weak transcription	Esophagus	oesophagus
6	chr7:129305000-129338200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr7:129307200-129352000	Weak transcription	NHLF	lung
8	chr7:129311200-129322600	Strong transcription	Fetal Thymus	thymus
9	chr7:129311400-129323800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr7:129311400-129352200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr7:129313000-129330200	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr7:129314400-129330200	Weak transcription	Right Ventricle	heart
13	chr7:129314600-129329800	Weak transcription	Spleen	Spleen
14	chr7:129314800-129330200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr7:129314800-129351200	Weak transcription	Pancreas	Pancrea
16	chr7:129315000-129331400	Weak transcription	Colonic Mucosa	Colon
17	chr7:129315200-129329200	Weak transcription	NHEK	skin
18	chr7:129315200-129330200	Weak transcription	Brain Angular Gyrus	brain
19	chr7:129315200-129330200	Weak transcription	Rectal Smooth Muscle	rectum
20	chr7:129315200-129341800	Weak transcription	NH-A	brain
21	chr7:129315400-129331600	Weak transcription	HSMM	muscle
22	chr7:129315400-129357000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr7:129315600-129324600	Weak transcription	HUVEC	blood vessel
24	chr7:129315600-129330200	Weak transcription	Osteobl	bone
25	chr7:129315600-129331600	Weak transcription	Brain Anterior Caudate	brain
26	chr7:129315600-129331600	Weak transcription	HSMMtube	muscle
27	chr7:129315600-129373600	Weak transcription	Psoas Muscle	Psoas
28	chr7:129315800-129324600	Weak transcription	Brain Substantia Nigra	brain
29	chr7:129316000-129324600	Weak transcription	Brain Cingulate Gyrus	brain
30	chr7:129316000-129330000	Weak transcription	Fetal Muscle Trunk	muscle
31	chr7:129316000-129330200	Weak transcription	Brain Hippocampus Middle	brain
32	chr7:129316000-129331400	Weak transcription	Colon Smooth Muscle	Colon
33	chr7:129316000-129331600	Weak transcription	GM12878-XiMat	blood
34	chr7:129316200-129321800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr7:129316200-129329200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr7:129316200-129329400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr7:129316200-129330000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr7:129316200-129330200	Weak transcription	Placenta Amnion	Placenta Amnion
39	chr7:129316200-129330200	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr7:129316400-129324600	Weak transcription	Fetal Muscle Leg	muscle
41	chr7:129316400-129324800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr7:129316400-129329000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr7:129316400-129329400	Weak transcription	Fetal Intestine Large	intestine
44	chr7:129316400-129330000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr7:129316400-129330200	Weak transcription	Fetal Brain Female	brain
46	chr7:129316400-129331400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
47	chr7:129316400-129350200	Weak transcription	Brain Germinal Matrix	brain
48	chr7:129316400-129357200	Weak transcription	Fetal Brain Male	brain
49	chr7:129316600-129329400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
50	chr7:129316600-129330200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links