Variant report

Variant	rs10808240
Chromosome Location	chr7:129266759-129266760
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RUNX3	chr7:129266713-129267064	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:129251593..129253816-chr7:129265350..129268702,3	K562	blood:

Variant related genes	Relation type
NRF1	TF binding region
ENSG00000106459	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10215964	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs10245497	0.88[CEU][hapmap];0.86[CHB][hapmap]
rs10249998	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10252513	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10255077	1.00[CHB][hapmap]
rs10275592	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs10279839	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1450878	0.88[CEU][hapmap];0.86[CHB][hapmap]
rs1562833	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs1882094	0.87[YRI][hapmap]
rs2402965	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2402966	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[YRI][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2402968	1.00[CHB][hapmap];0.86[YRI][hapmap];0.82[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs2402969	1.00[CHB][hapmap]
rs2402972	1.00[CHB][hapmap]
rs2896422	1.00[CHB][hapmap]
rs2896423	1.00[CHB][hapmap]
rs4292630	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4348430	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4728171	0.89[CEU][hapmap];0.85[CHB][hapmap]
rs4728177	1.00[CHB][hapmap]
rs4731607	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4731608	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4731612	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs4731621	1.00[CHB][hapmap]
rs6467255	0.89[CEU][hapmap];0.86[CHB][hapmap]
rs6467257	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[YRI][hapmap];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6946418	0.87[YRI][hapmap]
rs6958958	1.00[CHB][hapmap]
rs6961102	0.91[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs6967348	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs6969441	0.87[YRI][hapmap]
rs7778085	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7786760	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7788849	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7794909	0.88[CHB][hapmap]
rs7799885	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7802940	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs7803431	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7805465	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs9792084	0.88[CEU][hapmap];1.00[CHB][hapmap];0.94[YRI][hapmap];0.93[ASN][1000 genomes]

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:129252800-129285800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr7:129253000-129297200	Weak transcription	Lung	lung
3	chr7:129253200-129267200	Weak transcription	Spleen	Spleen
4	chr7:129253200-129269800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr7:129253200-129278200	Weak transcription	Right Ventricle	heart
6	chr7:129253200-129283200	Weak transcription	HSMM	muscle
7	chr7:129253400-129271200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr7:129253400-129275400	Weak transcription	Brain Cingulate Gyrus	brain
9	chr7:129253400-129281800	Weak transcription	Stomach Mucosa	stomach
10	chr7:129253800-129267400	Weak transcription	Fetal Muscle Trunk	muscle
11	chr7:129253800-129297200	Weak transcription	Fetal Stomach	stomach
12	chr7:129254600-129267000	Weak transcription	Fetal Brain Female	brain
13	chr7:129255200-129275200	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr7:129255200-129286200	Weak transcription	Hela-S3	cervix
15	chr7:129255400-129267000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr7:129255600-129269000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr7:129255600-129278000	Weak transcription	Fetal Lung	lung
18	chr7:129256400-129267600	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr7:129256400-129274600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr7:129256600-129267200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr7:129256600-129269400	Weak transcription	Primary B cells from peripheral blood	blood
22	chr7:129256600-129283400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr7:129256600-129284400	Weak transcription	HMEC	breast
24	chr7:129256600-129286600	Weak transcription	Thymus	Thymus
25	chr7:129257600-129269800	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr7:129257600-129274400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr7:129257600-129282800	Weak transcription	Osteobl	bone
28	chr7:129257600-129288400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr7:129257800-129266800	Weak transcription	Adipose Nuclei	Adipose
30	chr7:129257800-129267800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr7:129257800-129273000	Weak transcription	Brain Germinal Matrix	brain
32	chr7:129257800-129289000	Weak transcription	NHEK	skin
33	chr7:129257800-129297000	Weak transcription	Primary hematopoietic stem cells	blood
34	chr7:129257800-129297000	Weak transcription	Fetal Intestine Large	intestine
35	chr7:129257800-129297200	Weak transcription	Aorta	Aorta
36	chr7:129258400-129272600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr7:129258400-129283000	Weak transcription	Fetal Thymus	thymus
38	chr7:129258600-129271400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chr7:129258800-129266800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr7:129259000-129269800	Weak transcription	Primary monocytes fromperipheralblood	blood
41	chr7:129259000-129296800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
42	chr7:129259200-129286200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
43	chr7:129260200-129269800	Weak transcription	A549	lung
44	chr7:129260200-129273000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
45	chr7:129260200-129297200	Weak transcription	Fetal Intestine Small	intestine
46	chr7:129260400-129274600	Weak transcription	Liver	Liver
47	chr7:129262200-129267000	Weak transcription	Primary B cells from cord blood	blood
48	chr7:129262800-129266800	Weak transcription	Ovary	ovary
49	chr7:129262800-129297000	Weak transcription	Primary T cells fromperipheralblood	blood
50	chr7:129263000-129269800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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