Variant report

Variant	rs6467257
Chromosome Location	chr7:129304991-129304992
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:129304757..129307175-chr7:129309618..129311232,2	K562	blood:
2	chr7:129303280..129305949-chr7:129417875..129421577,3	K562	blood:
3	chr7:129304389..129308303-chr7:129309570..129312767,4	K562	blood:
4	chr7:129303980..129305044-chr7:129649293..129651486,10	K562	blood:
5	chr7:129303698..129305924-chr7:129463932..129466557,2	MCF-7	breast:
6	chr7:129303978..129305426-chr7:129469553..129470544,8	K562	blood:
7	chr7:129303349..129305568-chr7:129461167..129463400,2	K562	blood:
8	chr7:129302797..129305366-chr7:129652511..129655155,2	MCF-7	breast:
9	chr7:129302884..129306085-chr7:129464127..129467247,3	MCF-7	breast:
10	chr7:129303697..129305648-chr7:129464306..129466248,38	K562	blood:
11	chr7:129304033..129305187-chr7:129464379..129466144,7	MCF-7	breast:
12	chr7:129304139..129306866-chr7:129308475..129310745,2	MCF-7	breast:

No data

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10215964	1.00[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.89[MEX][hapmap];0.86[TSI][hapmap];0.83[YRI][hapmap];0.86[ASN][1000 genomes]
rs10245497	0.91[CEU][hapmap];0.86[CHB][hapmap];0.87[CHD][hapmap];0.89[MEX][hapmap];0.86[TSI][hapmap]
rs10249998	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10252513	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10255077	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10275592	0.91[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.82[YRI][hapmap];0.86[ASN][1000 genomes]
rs10279839	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10808240	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[YRI][hapmap];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1450878	0.91[CEU][hapmap];0.86[CHB][hapmap];0.87[CHD][hapmap];0.89[MEX][hapmap];0.86[TSI][hapmap]
rs1562833	1.00[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[MEX][hapmap];0.86[TSI][hapmap];0.83[YRI][hapmap];0.86[ASN][1000 genomes]
rs1882094	0.94[YRI][hapmap]
rs2402965	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2402966	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2402968	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2402969	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2402972	1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap]
rs2896422	1.00[CHB][hapmap]
rs2896423	1.00[CHB][hapmap]
rs4292630	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4348430	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4379396	0.82[EUR][1000 genomes]
rs4728171	0.91[CEU][hapmap];0.85[CHB][hapmap]
rs4728177	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4731607	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4731608	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4731612	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4731621	1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap]
rs6467255	0.91[CEU][hapmap];0.86[CHB][hapmap]
rs6946418	0.94[YRI][hapmap]
rs6958958	1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap]
rs6961102	0.86[ASN][1000 genomes]
rs6967348	1.00[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[MEX][hapmap];0.86[TSI][hapmap];0.83[YRI][hapmap];0.86[ASN][1000 genomes]
rs6969441	0.94[YRI][hapmap]
rs7778085	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7786760	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7788849	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7794909	0.88[CHB][hapmap]
rs7799885	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7802940	1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs7803431	0.90[ASN][1000 genomes]
rs7805465	0.91[CEU][hapmap];1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs9792084	0.91[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.86[ASN][1000 genomes]

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:129283800-129331600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr7:129289200-129314000	Weak transcription	Fetal Brain Male	brain
3	chr7:129290000-129325800	Weak transcription	Stomach Mucosa	stomach
4	chr7:129293800-129311200	Weak transcription	Brain Anterior Caudate	brain
5	chr7:129293800-129311400	Weak transcription	Brain Angular Gyrus	brain
6	chr7:129297800-129349800	Weak transcription	Small Intestine	intestine
7	chr7:129298600-129309800	Weak transcription	Fetal Heart	heart
8	chr7:129299800-129311400	Weak transcription	Colon Smooth Muscle	Colon
9	chr7:129300000-129314000	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr7:129300600-129311800	Weak transcription	Pancreas	Pancrea
11	chr7:129301000-129330200	Weak transcription	Gastric	stomach
12	chr7:129301200-129311200	Weak transcription	Right Ventricle	heart
13	chr7:129301200-129312600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr7:129301800-129311800	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr7:129302000-129305400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr7:129302000-129309600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr7:129302000-129310400	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr7:129302000-129310600	Weak transcription	Primary hematopoietic stem cells	blood
19	chr7:129302000-129311200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr7:129302000-129311200	Weak transcription	Brain Hippocampus Middle	brain
21	chr7:129302000-129311200	Weak transcription	Duodenum Mucosa	Duodenum
22	chr7:129302000-129311200	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr7:129302000-129311200	Weak transcription	Fetal Stomach	stomach
24	chr7:129302000-129311200	Weak transcription	Left Ventricle	heart
25	chr7:129302000-129311200	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr7:129302000-129311200	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr7:129302000-129311200	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr7:129302000-129311400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
29	chr7:129302000-129311400	Weak transcription	Brain Substantia Nigra	brain
30	chr7:129302000-129311600	Weak transcription	Brain Germinal Matrix	brain
31	chr7:129302000-129311800	Weak transcription	Spleen	Spleen
32	chr7:129302000-129312400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
33	chr7:129302000-129314200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr7:129302000-129314200	Weak transcription	Psoas Muscle	Psoas
35	chr7:129302000-129314200	Weak transcription	Rectal Smooth Muscle	rectum
36	chr7:129302000-129314400	Weak transcription	Aorta	Aorta
37	chr7:129302000-129314600	Weak transcription	Skeletal Muscle Female	skeletal muscle
38	chr7:129302000-129314800	Weak transcription	Brain Cingulate Gyrus	brain
39	chr7:129302000-129315400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
40	chr7:129302000-129317000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
41	chr7:129302000-129331800	Weak transcription	Esophagus	oesophagus
42	chr7:129302200-129310000	Weak transcription	Cortex derived primary cultured neurospheres	brain
43	chr7:129302200-129310600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
44	chr7:129302200-129311000	Weak transcription	Primary B cells from peripheral blood	blood
45	chr7:129302200-129311200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr7:129302200-129311200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr7:129302200-129311200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
48	chr7:129302200-129311200	Weak transcription	Primary T helper cells PMA-I stimulated	--
49	chr7:129302200-129311200	Weak transcription	Primary T helper cells fromperipheralblood	blood
50	chr7:129302200-129311200	Weak transcription	Adipose Nuclei	Adipose

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