Variant report

Variant	rs7809459
Chromosome Location	chr7:129373823-129373824
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:129373344..129375682-chr7:129387630..129389777,2	K562	blood:
2	chr7:129372539..129374355-chr7:129379814..129381363,2	MCF-7	breast:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10255077	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2402968	0.82[ASN][1000 genomes]
rs2402969	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2402972	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2402978	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2896422	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2896423	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4728177	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4731621	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58736446	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6949469	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6949742	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6958958	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7794909	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7801252	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7802940	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:129319000-129380000	Weak transcription	NHDF-Ad	bronchial
2	chr7:129339200-129381800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr7:129343200-129379600	Weak transcription	Stomach Mucosa	stomach
4	chr7:129348200-129375600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr7:129348200-129392000	Strong transcription	Primary T helper cells fromperipheralblood	blood
6	chr7:129348600-129375200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr7:129348600-129375800	Strong transcription	Primary T cells fromperipheralblood	blood
8	chr7:129351600-129394800	Weak transcription	Hela-S3	cervix
9	chr7:129355200-129380600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr7:129357000-129392400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
11	chr7:129357400-129378400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr7:129357800-129374200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr7:129358800-129376800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr7:129360600-129394800	Weak transcription	Small Intestine	intestine
15	chr7:129361800-129392400	Strong transcription	Monocytes-CD14+_RO01746	blood
16	chr7:129362200-129374800	Strong transcription	HUES48 Cell Line	embryonic stem cell
17	chr7:129362200-129375000	Strong transcription	Primary T cells from cord blood	blood
18	chr7:129362200-129376000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr7:129362200-129379000	Strong transcription	Placenta	Placenta
20	chr7:129362200-129380600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr7:129362200-129381200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr7:129362200-129387800	Strong transcription	Liver	Liver
23	chr7:129362400-129375200	Strong transcription	Primary B cells from peripheral blood	blood
24	chr7:129364200-129397600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
25	chr7:129364400-129375800	Strong transcription	Thymus	Thymus
26	chr7:129365200-129388400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr7:129366600-129375600	Strong transcription	HUES64 Cell Line	embryonic stem cell
28	chr7:129366800-129375000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
29	chr7:129366800-129399400	Weak transcription	Fetal Kidney	kidney
30	chr7:129367200-129374200	Weak transcription	Esophagus	oesophagus
31	chr7:129367600-129379200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
32	chr7:129367800-129374200	Weak transcription	Colonic Mucosa	Colon
33	chr7:129367800-129379400	Weak transcription	Pancreas	Pancrea
34	chr7:129368000-129374000	Weak transcription	Brain Angular Gyrus	brain
35	chr7:129368200-129378400	Weak transcription	Pancreatic Islets	Pancreatic Islet
36	chr7:129368600-129374200	Weak transcription	Muscle Satellite Cultured Cells	--
37	chr7:129369000-129375200	Strong transcription	Fetal Intestine Large	intestine
38	chr7:129369200-129380600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr7:129369400-129374200	Weak transcription	Aorta	Aorta
40	chr7:129369400-129378200	Weak transcription	Colon Smooth Muscle	Colon
41	chr7:129369400-129378600	Weak transcription	Right Ventricle	heart
42	chr7:129369400-129379400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
43	chr7:129369400-129379600	Weak transcription	Right Atrium	heart
44	chr7:129369600-129374000	Weak transcription	Brain Germinal Matrix	brain
45	chr7:129369600-129374000	Weak transcription	Placenta Amnion	Placenta Amnion
46	chr7:129369600-129376800	Weak transcription	Rectal Mucosa Donor 31	rectum
47	chr7:129369600-129380400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr7:129369600-129399400	Weak transcription	Fetal Brain Male	brain
49	chr7:129369800-129375800	Strong transcription	Fetal Intestine Small	intestine
50	chr7:129369800-129376800	Weak transcription	Fetal Heart	heart

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