Variant report

Variant	rs12706898
Chromosome Location	chr7:129254997-129254998
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	WRNIP1	chr7:129254991-129255229	GM12878	blood:	n/a	n/a
2	CEBPB	chr7:129254918-129255246	HepG2	liver:	n/a	n/a
3	CEBPB	chr7:129254894-129255262	IMR90	lung:	n/a	n/a
4	FOXA1	chr7:129254756-129255251	HepG2	liver:	n/a	n/a
5	NFIC	chr7:129254843-129255317	GM12878	blood:	n/a	n/a
6	FOXA2	chr7:129254899-129255205	HepG2	liver:	n/a	n/a
7	FOS	chr7:129254968-129255187	MCF10A-Er-Src	breast:	n/a	n/a
8	FOS	chr7:129254922-129255263	MCF10A-Er-Src	breast:	n/a	n/a
9	EBF1	chr7:129254932-129255241	GM12878	blood:	n/a	n/a
10	CEBPB	chr7:129254950-129255201	K562	blood:	n/a	n/a
11	FOXA1	chr7:129254909-129255201	HepG2	liver:	n/a	n/a
12	MYC	chr7:129254866-129255233	NB4	blood:	n/a	n/a
13	MYC	chr7:129254897-129255110	MCF10A-Er-Src	breast:	n/a	n/a
14	FOS	chr7:129254898-129255262	MCF10A-Er-Src	breast:	n/a	n/a
15	MXI1	chr7:129254954-129255169	HepG2	liver:	n/a	n/a
16	EP300	chr7:129254885-129255230	HepG2	liver:	n/a	chr7:129255020-129255029
17	RUNX3	chr7:129254804-129255323	GM12878	blood:	n/a	n/a
18	RUNX3	chr7:129254904-129255274	GM12878	blood:	n/a	n/a
19	ARID3A	chr7:129254712-129255198	HepG2	liver:	n/a	n/a
20	CHD1	chr7:129254994-129255185	GM12878	blood:	n/a	n/a
21	CEBPD	chr7:129254992-129255242	HepG2	liver:	n/a	n/a
22	MAX	chr7:129254856-129255264	NB4	blood:	n/a	n/a
23	POLR2A	chr7:129254829-129255146	MCF10A-Er-Src	breast:	n/a	n/a
24	HDAC2	chr7:129254870-129255207	HepG2	liver:	n/a	n/a
25	CEBPB	chr7:129254957-129255139	HepG2	liver:	n/a	n/a
26	FOS	chr7:129254959-129255230	MCF10A-Er-Src	breast:	n/a	n/a
27	STAT3	chr7:129254976-129255158	MCF10A-Er-Src	breast:	n/a	n/a
28	MXI1	chr7:129254627-129255189	GM12878	blood:	n/a	n/a
29	EP300	chr7:129254968-129255184	HepG2	liver:	n/a	chr7:129255020-129255029
30	CEBPB	chr7:129254909-129255258	HepG2	liver:	n/a	n/a
31	EP300	chr7:129254916-129255177	GM12878	blood:	n/a	chr7:129255020-129255029
32	MAFK	chr7:129254909-129255202	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:129253872..129256640-chr7:129267800..129269342,2	MCF-7	breast:
2	chr7:129228150..129230324-chr7:129254634..129257789,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000273329	TF binding region

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11771609	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11984014	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12154955	1.00[CHB][hapmap];0.90[ASN][1000 genomes]
rs12531460	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13233863	1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4612263	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs62490955	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6963433	0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs6965820	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6969441	0.85[JPT][hapmap]
rs6978476	0.88[ASN][1000 genomes]

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:129252800-129255000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr7:129252800-129285800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr7:129253000-129255200	Enhancers	Primary T cells fromperipheralblood	blood
4	chr7:129253000-129255200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
5	chr7:129253000-129256200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr7:129253000-129256200	Weak transcription	Aorta	Aorta
7	chr7:129253000-129259000	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr7:129253000-129260200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr7:129253000-129262400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr7:129253000-129262400	Weak transcription	Ovary	ovary
11	chr7:129253000-129297200	Weak transcription	Lung	lung
12	chr7:129253200-129255000	Weak transcription	Colon Smooth Muscle	Colon
13	chr7:129253200-129255200	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr7:129253200-129255200	Enhancers	Fetal Intestine Large	intestine
15	chr7:129253200-129255400	Enhancers	Fetal Thymus	thymus
16	chr7:129253200-129255600	Enhancers	Primary B cells from peripheral blood	blood
17	chr7:129253200-129255600	Enhancers	Cortex derived primary cultured neurospheres	brain
18	chr7:129253200-129255800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr7:129253200-129256200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr7:129253200-129256200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr7:129253200-129256200	Enhancers	Primary neutrophils fromperipheralblood	blood
22	chr7:129253200-129256200	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr7:129253200-129256200	Weak transcription	Pancreas	Pancrea
24	chr7:129253200-129256400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr7:129253200-129257200	Weak transcription	Psoas Muscle	Psoas
26	chr7:129253200-129257200	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr7:129253200-129257400	Enhancers	HUES64 Cell Line	embryonic stem cell
28	chr7:129253200-129257400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr7:129253200-129257600	Weak transcription	Right Atrium	heart
30	chr7:129253200-129257800	Enhancers	Primary hematopoietic stem cells	blood
31	chr7:129253200-129258400	Enhancers	Primary T killer memory cells from peripheral blood	blood
32	chr7:129253200-129258800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr7:129253200-129259000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
34	chr7:129253200-129259400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
35	chr7:129253200-129260200	Enhancers	Primary T helper naive cells from peripheral blood	blood
36	chr7:129253200-129260200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
37	chr7:129253200-129262200	Weak transcription	NH-A	brain
38	chr7:129253200-129267200	Weak transcription	Spleen	Spleen
39	chr7:129253200-129269800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
40	chr7:129253200-129278200	Weak transcription	Right Ventricle	heart
41	chr7:129253200-129283200	Weak transcription	HSMM	muscle
42	chr7:129253400-129255000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
43	chr7:129253400-129255000	Weak transcription	NHLF	lung
44	chr7:129253400-129255200	Enhancers	Brain Anterior Caudate	brain
45	chr7:129253400-129255200	Enhancers	Duodenum Mucosa	Duodenum
46	chr7:129253400-129255200	Enhancers	Thymus	Thymus
47	chr7:129253400-129255400	Enhancers	K562	blood
48	chr7:129253400-129255600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr7:129253400-129255600	Weak transcription	Rectal Mucosa Donor 29	rectum
50	chr7:129253400-129256400	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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