Variant report

Variant	rs12531460
Chromosome Location	chr7:129260534-129260535
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:129256509..129259242-chr7:129259807..129261335,2	MCF-7	breast:
2	chr7:129259213..129260936-chr7:129285295..129288130,2	MCF-7	breast:
3	chr7:129259268..129262342-chr7:129262856..129266141,3	MCF-7	breast:
4	chr7:129258265..129261102-chr7:129275466..129276981,2	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11771609	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11984014	0.88[AFR][1000 genomes]
rs12154955	0.83[ASN][1000 genomes]
rs12540217	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12706898	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13233863	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4612263	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62490955	0.84[ASN][1000 genomes]
rs6965820	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6978476	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:129252800-129285800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr7:129253000-129262400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr7:129253000-129262400	Weak transcription	Ovary	ovary
4	chr7:129253000-129297200	Weak transcription	Lung	lung
5	chr7:129253200-129262200	Weak transcription	NH-A	brain
6	chr7:129253200-129267200	Weak transcription	Spleen	Spleen
7	chr7:129253200-129269800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr7:129253200-129278200	Weak transcription	Right Ventricle	heart
9	chr7:129253200-129283200	Weak transcription	HSMM	muscle
10	chr7:129253400-129264200	Enhancers	Primary T helper cells fromperipheralblood	blood
11	chr7:129253400-129271200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr7:129253400-129275400	Weak transcription	Brain Cingulate Gyrus	brain
13	chr7:129253400-129281800	Weak transcription	Stomach Mucosa	stomach
14	chr7:129253800-129267400	Weak transcription	Fetal Muscle Trunk	muscle
15	chr7:129253800-129297200	Weak transcription	Fetal Stomach	stomach
16	chr7:129254600-129267000	Weak transcription	Fetal Brain Female	brain
17	chr7:129255200-129275200	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr7:129255200-129286200	Weak transcription	Hela-S3	cervix
19	chr7:129255400-129267000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr7:129255600-129263000	Weak transcription	Fetal Heart	heart
21	chr7:129255600-129269000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr7:129255600-129278000	Weak transcription	Fetal Lung	lung
23	chr7:129256400-129267600	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr7:129256400-129274600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr7:129256600-129261600	Weak transcription	Left Ventricle	heart
26	chr7:129256600-129262400	Weak transcription	Pancreas	Pancrea
27	chr7:129256600-129265800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr7:129256600-129267200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr7:129256600-129269400	Weak transcription	Primary B cells from peripheral blood	blood
30	chr7:129256600-129283400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr7:129256600-129284400	Weak transcription	HMEC	breast
32	chr7:129256600-129286600	Weak transcription	Thymus	Thymus
33	chr7:129256800-129264600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
34	chr7:129257200-129266000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
35	chr7:129257400-129262600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr7:129257600-129263800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr7:129257600-129269800	Weak transcription	HUES6 Cell Line	embryonic stem cell
38	chr7:129257600-129274400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr7:129257600-129282800	Weak transcription	Osteobl	bone
40	chr7:129257600-129288400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr7:129257800-129262800	Enhancers	Primary neutrophils fromperipheralblood	blood
42	chr7:129257800-129263000	Weak transcription	Brain Anterior Caudate	brain
43	chr7:129257800-129263800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr7:129257800-129266800	Weak transcription	Adipose Nuclei	Adipose
45	chr7:129257800-129267800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr7:129257800-129273000	Weak transcription	Brain Germinal Matrix	brain
47	chr7:129257800-129289000	Weak transcription	NHEK	skin
48	chr7:129257800-129297000	Weak transcription	Primary hematopoietic stem cells	blood
49	chr7:129257800-129297000	Weak transcription	Fetal Intestine Large	intestine
50	chr7:129257800-129297200	Weak transcription	Aorta	Aorta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links