Variant report

Variant	rs6965820
Chromosome Location	chr7:129289656-129289657
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:129281360..129283857-chr7:129288522..129290330,2	K562	blood:
2	chr7:129288674..129290633-chr7:129421581..129423638,2	K562	blood:
3	chr7:129287658..129290681-chr7:129418523..129421116,3	MCF-7	breast:
4	chr7:129280953..129284177-chr7:129287303..129290087,3	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11760589	0.86[AFR][1000 genomes]
rs11761434	0.83[AFR][1000 genomes]
rs12531460	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12540217	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12706898	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13233863	0.81[ASN][1000 genomes]
rs2402967	0.81[AFR][1000 genomes]
rs4612263	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6953987	0.83[AFR][1000 genomes]
rs6978476	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:129253000-129297200	Weak transcription	Lung	lung
2	chr7:129253800-129297200	Weak transcription	Fetal Stomach	stomach
3	chr7:129257800-129297000	Weak transcription	Primary hematopoietic stem cells	blood
4	chr7:129257800-129297000	Weak transcription	Fetal Intestine Large	intestine
5	chr7:129257800-129297200	Weak transcription	Aorta	Aorta
6	chr7:129259000-129296800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr7:129260200-129297200	Weak transcription	Fetal Intestine Small	intestine
8	chr7:129262800-129297000	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr7:129265200-129297200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr7:129270200-129293000	Weak transcription	Primary B cells from peripheral blood	blood
11	chr7:129271000-129293400	Weak transcription	Primary neutrophils fromperipheralblood	blood
12	chr7:129273400-129297000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr7:129275600-129297000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr7:129275600-129297200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr7:129275600-129297200	Weak transcription	HepG2	liver
16	chr7:129277000-129297200	Weak transcription	Colon Smooth Muscle	Colon
17	chr7:129278400-129292800	Weak transcription	Fetal Lung	lung
18	chr7:129278400-129293400	Weak transcription	Primary T cells from cord blood	blood
19	chr7:129278400-129297000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
20	chr7:129278800-129295400	Weak transcription	Primary monocytes fromperipheralblood	blood
21	chr7:129279200-129296800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr7:129280600-129297000	Weak transcription	Duodenum Mucosa	Duodenum
23	chr7:129281000-129297200	Weak transcription	Adipose Nuclei	Adipose
24	chr7:129282800-129297400	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr7:129283400-129297200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr7:129283600-129297200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
27	chr7:129283600-129297200	Weak transcription	Gastric	stomach
28	chr7:129283800-129292600	Weak transcription	GM12878-XiMat	blood
29	chr7:129283800-129296800	Weak transcription	Dnd41	blood
30	chr7:129283800-129297200	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr7:129283800-129331600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr7:129284000-129292800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr7:129284000-129293400	Weak transcription	Fetal Brain Female	brain
34	chr7:129284000-129297200	Weak transcription	Ovary	ovary
35	chr7:129284000-129297200	Weak transcription	Rectal Mucosa Donor 29	rectum
36	chr7:129284000-129297200	Weak transcription	NHDF-Ad	bronchial
37	chr7:129284000-129297400	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr7:129284000-129297600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr7:129284200-129297000	Weak transcription	Placenta	Placenta
40	chr7:129284600-129295600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr7:129284600-129296800	Weak transcription	HMEC	breast
42	chr7:129284600-129297200	Weak transcription	Brain Cingulate Gyrus	brain
43	chr7:129284600-129297200	Weak transcription	HUVEC	blood vessel
44	chr7:129284600-129298200	Weak transcription	Brain Hippocampus Middle	brain
45	chr7:129284800-129293200	Weak transcription	Fetal Muscle Trunk	muscle
46	chr7:129285200-129297200	Weak transcription	Esophagus	oesophagus
47	chr7:129285400-129293400	Weak transcription	Primary B cells from cord blood	blood
48	chr7:129285400-129297400	Weak transcription	Brain Germinal Matrix	brain
49	chr7:129286600-129297600	Weak transcription	A549	lung
50	chr7:129286600-129299400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links