Variant report

Variant	rs2402967
Chromosome Location	chr7:129298136-129298137
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:129298070..129300835-chr7:129464702..129466571,2	MCF-7	breast:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10954245	0.88[ASN][1000 genomes]
rs10954248	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10954251	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11570363	0.88[ASN][1000 genomes]
rs11760589	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11761434	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11769146	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11773023	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11975979	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12154342	0.82[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12154677	0.83[ASN][1000 genomes]
rs13225629	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13226276	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13230677	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13231538	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13236221	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13239011	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13244638	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17556221	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17556430	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1962038	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2293629	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2402975	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34498715	0.88[ASN][1000 genomes]
rs36017781	0.83[EUR][1000 genomes]
rs36033773	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36083190	0.88[ASN][1000 genomes]
rs3736626	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3800599	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4440554	0.96[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6953987	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6959550	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6965820	0.81[AFR][1000 genomes]
rs6975927	0.88[ASN][1000 genomes]
rs6976516	0.88[ASN][1000 genomes]
rs6978476	0.81[AFR][1000 genomes]
rs73159640	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9649538	0.85[CHB][hapmap];1.00[JPT][hapmap]

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:129283800-129331600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr7:129284600-129298200	Weak transcription	Brain Hippocampus Middle	brain
3	chr7:129286600-129299400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr7:129286600-129301600	Weak transcription	HSMMtube	muscle
5	chr7:129286800-129304400	Weak transcription	NHLF	lung
6	chr7:129287000-129298200	Weak transcription	Fetal Heart	heart
7	chr7:129287200-129301600	Weak transcription	Psoas Muscle	Psoas
8	chr7:129287800-129299600	Weak transcription	NH-A	brain
9	chr7:129289200-129314000	Weak transcription	Fetal Brain Male	brain
10	chr7:129290000-129299600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr7:129290000-129325800	Weak transcription	Stomach Mucosa	stomach
12	chr7:129290400-129304600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr7:129290600-129299400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr7:129293600-129301600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr7:129293800-129311200	Weak transcription	Brain Anterior Caudate	brain
16	chr7:129293800-129311400	Weak transcription	Brain Angular Gyrus	brain
17	chr7:129294000-129300400	Weak transcription	Fetal Brain Female	brain
18	chr7:129296000-129298200	Weak transcription	Colonic Mucosa	Colon
19	chr7:129296600-129299600	Strong transcription	Fetal Thymus	thymus
20	chr7:129296600-129301600	Strong transcription	Primary T helper cells fromperipheralblood	blood
21	chr7:129296800-129298200	Strong transcription	HUES6 Cell Line	embryonic stem cell
22	chr7:129296800-129298200	Strong transcription	HUES64 Cell Line	embryonic stem cell
23	chr7:129296800-129299000	Strong transcription	Primary monocytes fromperipheralblood	blood
24	chr7:129296800-129299400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr7:129296800-129299400	Strong transcription	Monocytes-CD14+_RO01746	blood
26	chr7:129296800-129300600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
27	chr7:129296800-129300600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr7:129296800-129301400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
29	chr7:129297000-129298400	Strong transcription	H9 Cell Line	embryonic stem cell
30	chr7:129297000-129298400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr7:129297000-129298600	Strong transcription	Thymus	Thymus
32	chr7:129297000-129298800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr7:129297000-129299200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr7:129297000-129299200	Strong transcription	HUES48 Cell Line	embryonic stem cell
35	chr7:129297000-129299200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr7:129297000-129299400	Strong transcription	Primary neutrophils fromperipheralblood	blood
37	chr7:129297000-129299400	Strong transcription	Primary hematopoietic stem cells	blood
38	chr7:129297000-129299400	Strong transcription	GM12878-XiMat	blood
39	chr7:129297000-129299600	Strong transcription	Cortex derived primary cultured neurospheres	brain
40	chr7:129297000-129299600	Strong transcription	K562	blood
41	chr7:129297000-129300200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr7:129297000-129300200	Strong transcription	Primary T cells from cord blood	blood
43	chr7:129297000-129300200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
44	chr7:129297000-129300400	Strong transcription	Primary B cells from cord blood	blood
45	chr7:129297000-129300400	Strong transcription	Fetal Intestine Large	intestine
46	chr7:129297000-129300400	Strong transcription	Placenta	Placenta
47	chr7:129297000-129300600	Strong transcription	Primary T helper cells PMA-I stimulated	--
48	chr7:129297000-129300800	Strong transcription	Duodenum Mucosa	Duodenum
49	chr7:129297000-129301000	Strong transcription	Primary T cells fromperipheralblood	blood
50	chr7:129297000-129301000	Strong transcription	Osteobl	bone

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