Variant report

Variant	rs3736626
Chromosome Location	chr7:129350170-129350171
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:129349986..129354083-chr7:129418762..129421039,4	MCF-7	breast:

Extended variants
information (count: 39 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10954245	0.87[ASN][1000 genomes]
rs10954248	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10954251	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11557288	0.81[ASN][1000 genomes]
rs11570363	0.87[ASN][1000 genomes]
rs11760589	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11761434	0.96[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11769146	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.98[TSI][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11773023	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11975979	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12154342	0.87[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12154677	0.81[ASN][1000 genomes]
rs13225629	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13226276	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13230677	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13231538	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13236221	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13239011	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13244638	0.87[ASN][1000 genomes]
rs17556221	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17556430	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1962038	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1984823	0.81[CEU][hapmap];0.90[GIH][hapmap]
rs2293629	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.98[TSI][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2402967	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2402975	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34498715	0.87[ASN][1000 genomes]
rs36033773	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs36083190	0.87[ASN][1000 genomes]
rs3800599	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4440554	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4728175	0.94[ASW][hapmap];0.81[CEU][hapmap];0.93[GIH][hapmap];1.00[LWK][hapmap];0.91[MKK][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs4731615	0.83[CEU][hapmap]
rs6953987	0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.87[TSI][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6959550	0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6975927	0.87[ASN][1000 genomes]
rs6976516	0.87[ASN][1000 genomes]
rs73159640	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9649538	0.88[CHB][hapmap];1.00[JPT][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs3736626	UBE2H	cis	cerebellum	SCAN

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:129307200-129352000	Weak transcription	NHLF	lung
2	chr7:129311400-129352200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr7:129314800-129351200	Weak transcription	Pancreas	Pancrea
4	chr7:129315400-129357000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr7:129315600-129373600	Weak transcription	Psoas Muscle	Psoas
6	chr7:129316400-129350200	Weak transcription	Brain Germinal Matrix	brain
7	chr7:129316400-129357200	Weak transcription	Fetal Brain Male	brain
8	chr7:129319000-129380000	Weak transcription	NHDF-Ad	bronchial
9	chr7:129319200-129351200	Weak transcription	Hela-S3	cervix
10	chr7:129320600-129350200	Weak transcription	Fetal Kidney	kidney
11	chr7:129328000-129369000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr7:129332200-129350200	Weak transcription	Esophagus	oesophagus
13	chr7:129332200-129350200	Weak transcription	HUVEC	blood vessel
14	chr7:129332200-129351000	Weak transcription	Colon Smooth Muscle	Colon
15	chr7:129332400-129350200	Weak transcription	Gastric	stomach
16	chr7:129332400-129350200	Weak transcription	Lung	lung
17	chr7:129332400-129351800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr7:129332600-129350200	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr7:129332800-129350200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr7:129332800-129352200	Weak transcription	Right Ventricle	heart
21	chr7:129337600-129359200	Strong transcription	Monocytes-CD14+_RO01746	blood
22	chr7:129338800-129350200	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr7:129338800-129351200	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr7:129339000-129350800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr7:129339200-129356800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr7:129339200-129381800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
27	chr7:129342800-129360200	Weak transcription	Pancreatic Islets	Pancreatic Islet
28	chr7:129342800-129367000	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr7:129343200-129379600	Weak transcription	Stomach Mucosa	stomach
30	chr7:129343400-129361200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr7:129343600-129350200	Weak transcription	NH-A	brain
32	chr7:129345200-129355800	Strong transcription	Thymus	Thymus
33	chr7:129345600-129355200	Strong transcription	Primary monocytes fromperipheralblood	blood
34	chr7:129345800-129355000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr7:129345800-129359200	Strong transcription	Fetal Thymus	thymus
36	chr7:129346000-129350200	Weak transcription	Ovary	ovary
37	chr7:129346800-129372400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr7:129347000-129360200	Strong transcription	Primary B cells from peripheral blood	blood
39	chr7:129348000-129352800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr7:129348200-129350200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
41	chr7:129348200-129355600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
42	chr7:129348200-129375600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
43	chr7:129348200-129392000	Strong transcription	Primary T helper cells fromperipheralblood	blood
44	chr7:129348400-129351200	Strong transcription	A549	lung
45	chr7:129348400-129352200	Weak transcription	Fetal Heart	heart
46	chr7:129348400-129354800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr7:129348400-129372400	Strong transcription	Primary T helper cells PMA-I stimulated	--
48	chr7:129348400-129372400	Strong transcription	Dnd41	blood
49	chr7:129348600-129351200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
50	chr7:129348600-129352800	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain

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