Variant report

Variant	rs4728175
Chromosome Location	chr7:129354911-129354912
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:129354570..129358914-chr7:129360217..129362870,6	K562	blood:
2	chr7:129353197..129355229-chr7:129364532..129366081,2	K562	blood:
3	chr7:129354570..129356381-chr7:129360399..129362297,3	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10954251	0.81[CEU][hapmap]
rs11769146	0.81[CEU][hapmap];0.93[GIH][hapmap]
rs11773023	0.94[ASW][hapmap];0.81[CEU][hapmap];0.93[GIH][hapmap];1.00[LWK][hapmap];0.89[MKK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs13236221	0.81[CEU][hapmap]
rs13239011	0.81[CEU][hapmap]
rs17556221	0.81[CEU][hapmap];0.90[GIH][hapmap]
rs17556430	0.81[ASW][hapmap];0.81[CEU][hapmap];0.93[GIH][hapmap]
rs1962038	0.81[CEU][hapmap]
rs1984823	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.98[TSI][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2293629	0.81[CEU][hapmap];0.91[GIH][hapmap]
rs3736626	0.94[ASW][hapmap];0.81[CEU][hapmap];0.93[GIH][hapmap];1.00[LWK][hapmap];0.91[MKK][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs4440554	0.81[CEU][hapmap]
rs4731615	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4731617	0.92[JPT][hapmap]
rs6467260	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6953987	0.82[GIH][hapmap]
rs6959550	0.99[AFR][1000 genomes]
rs9641855	0.92[JPT][hapmap]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs4728175	TNPO3	cis	cerebellum	SCAN
rs4728175	UBE2H	cis	cerebellum	SCAN

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:129315400-129357000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr7:129315600-129373600	Weak transcription	Psoas Muscle	Psoas
3	chr7:129316400-129357200	Weak transcription	Fetal Brain Male	brain
4	chr7:129319000-129380000	Weak transcription	NHDF-Ad	bronchial
5	chr7:129328000-129369000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr7:129337600-129359200	Strong transcription	Monocytes-CD14+_RO01746	blood
7	chr7:129339200-129356800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr7:129339200-129381800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr7:129342800-129360200	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr7:129342800-129367000	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr7:129343200-129379600	Weak transcription	Stomach Mucosa	stomach
12	chr7:129343400-129361200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr7:129345200-129355800	Strong transcription	Thymus	Thymus
14	chr7:129345600-129355200	Strong transcription	Primary monocytes fromperipheralblood	blood
15	chr7:129345800-129355000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr7:129345800-129359200	Strong transcription	Fetal Thymus	thymus
17	chr7:129346800-129372400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr7:129347000-129360200	Strong transcription	Primary B cells from peripheral blood	blood
19	chr7:129348200-129355600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
20	chr7:129348200-129375600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr7:129348200-129392000	Strong transcription	Primary T helper cells fromperipheralblood	blood
22	chr7:129348400-129372400	Strong transcription	Primary T helper cells PMA-I stimulated	--
23	chr7:129348400-129372400	Strong transcription	Dnd41	blood
24	chr7:129348600-129355200	Strong transcription	Adipose Nuclei	Adipose
25	chr7:129348600-129355200	Strong transcription	GM12878-XiMat	blood
26	chr7:129348600-129355400	Strong transcription	Primary hematopoietic stem cells	blood
27	chr7:129348600-129355400	Strong transcription	Liver	Liver
28	chr7:129348600-129355600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr7:129348600-129355600	Strong transcription	Placenta	Placenta
30	chr7:129348600-129355800	Strong transcription	Sigmoid Colon	Sigmoid Colon
31	chr7:129348600-129360600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr7:129348600-129360600	Strong transcription	Duodenum Mucosa	Duodenum
33	chr7:129348600-129360600	Strong transcription	Rectal Mucosa Donor 29	rectum
34	chr7:129348600-129360800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
35	chr7:129348600-129361200	Strong transcription	HUES48 Cell Line	embryonic stem cell
36	chr7:129348600-129372400	Strong transcription	HUES6 Cell Line	embryonic stem cell
37	chr7:129348600-129372600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
38	chr7:129348600-129375200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr7:129348600-129375800	Strong transcription	Primary T cells fromperipheralblood	blood
40	chr7:129348800-129355000	Strong transcription	Spleen	Spleen
41	chr7:129348800-129355200	Strong transcription	H1 Cell Line	embryonic stem cell
42	chr7:129348800-129355200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr7:129348800-129355200	Strong transcription	Primary neutrophils fromperipheralblood	blood
44	chr7:129348800-129355200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr7:129348800-129355200	Strong transcription	Fetal Brain Female	brain
46	chr7:129348800-129355400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr7:129348800-129355400	Strong transcription	Fetal Muscle Leg	muscle
48	chr7:129348800-129355600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
49	chr7:129348800-129355600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
50	chr7:129348800-129355600	Strong transcription	Rectal Mucosa Donor 31	rectum

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