Variant report

Variant	rs17556221
Chromosome Location	chr7:129330016-129330017
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:129321375..129324178-chr7:129328402..129330581,2	K562	blood:
2	chr7:129329549..129331760-chr7:129332227..129334813,2	MCF-7	breast:
3	chr7:129311491..129314194-chr7:129329758..129331915,2	MCF-7	breast:

Extended variants
information (count: 38 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10954245	0.88[ASN][1000 genomes]
rs10954248	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10954251	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11570363	0.88[ASN][1000 genomes]
rs11760589	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11761434	0.96[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11769146	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.95[TSI][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11773023	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11975979	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12154342	0.87[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12154677	0.83[ASN][1000 genomes]
rs13225629	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13226276	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13230677	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13231538	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13236221	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13239011	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13244638	0.88[ASN][1000 genomes]
rs17556430	1.00[CEU][hapmap];0.86[CHB][hapmap];0.93[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1962038	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1984823	0.81[CEU][hapmap];0.93[GIH][hapmap]
rs2293629	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.95[TSI][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2402967	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2402975	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34498715	0.88[ASN][1000 genomes]
rs36033773	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36083190	0.88[ASN][1000 genomes]
rs3736626	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3800599	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4440554	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4728175	0.81[CEU][hapmap];0.90[GIH][hapmap]
rs4731615	0.83[CEU][hapmap]
rs6953987	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6959550	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6975927	0.88[ASN][1000 genomes]
rs6976516	0.88[ASN][1000 genomes]
rs73159640	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9649538	0.88[CHB][hapmap];1.00[JPT][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17556221	UBE2H	cis	cerebellum	SCAN

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:129283800-129331600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr7:129297800-129349800	Weak transcription	Small Intestine	intestine
3	chr7:129301000-129330200	Weak transcription	Gastric	stomach
4	chr7:129302000-129331800	Weak transcription	Esophagus	oesophagus
5	chr7:129305000-129338200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr7:129307200-129352000	Weak transcription	NHLF	lung
7	chr7:129311400-129352200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr7:129313000-129330200	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr7:129314400-129330200	Weak transcription	Right Ventricle	heart
10	chr7:129314800-129330200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr7:129314800-129351200	Weak transcription	Pancreas	Pancrea
12	chr7:129315000-129331400	Weak transcription	Colonic Mucosa	Colon
13	chr7:129315200-129330200	Weak transcription	Brain Angular Gyrus	brain
14	chr7:129315200-129330200	Weak transcription	Rectal Smooth Muscle	rectum
15	chr7:129315200-129341800	Weak transcription	NH-A	brain
16	chr7:129315400-129331600	Weak transcription	HSMM	muscle
17	chr7:129315400-129357000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr7:129315600-129330200	Weak transcription	Osteobl	bone
19	chr7:129315600-129331600	Weak transcription	Brain Anterior Caudate	brain
20	chr7:129315600-129331600	Weak transcription	HSMMtube	muscle
21	chr7:129315600-129373600	Weak transcription	Psoas Muscle	Psoas
22	chr7:129316000-129330200	Weak transcription	Brain Hippocampus Middle	brain
23	chr7:129316000-129331400	Weak transcription	Colon Smooth Muscle	Colon
24	chr7:129316000-129331600	Weak transcription	GM12878-XiMat	blood
25	chr7:129316200-129330200	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr7:129316200-129330200	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr7:129316400-129330200	Weak transcription	Fetal Brain Female	brain
28	chr7:129316400-129331400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
29	chr7:129316400-129350200	Weak transcription	Brain Germinal Matrix	brain
30	chr7:129316400-129357200	Weak transcription	Fetal Brain Male	brain
31	chr7:129316600-129330200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr7:129317600-129331600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr7:129317600-129338400	Weak transcription	K562	blood
34	chr7:129317800-129330200	Weak transcription	H1 Cell Line	embryonic stem cell
35	chr7:129317800-129330200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr7:129317800-129330200	Weak transcription	Lung	lung
37	chr7:129317800-129330400	Weak transcription	Primary hematopoietic stem cells	blood
38	chr7:129317800-129331200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr7:129317800-129331600	Weak transcription	Adipose Nuclei	Adipose
40	chr7:129317800-129331600	Weak transcription	Aorta	Aorta
41	chr7:129317800-129338400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
42	chr7:129317800-129338400	Weak transcription	H9 Cell Line	embryonic stem cell
43	chr7:129318200-129330200	Weak transcription	Liver	Liver
44	chr7:129318200-129330200	Weak transcription	Skeletal Muscle Female	skeletal muscle
45	chr7:129318400-129331600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
46	chr7:129318600-129331600	Weak transcription	A549	lung
47	chr7:129318800-129330200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr7:129318800-129331600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
49	chr7:129319000-129330200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
50	chr7:129319000-129330200	Weak transcription	Rectal Mucosa Donor 29	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links