Variant report

Variant	rs2293629
Chromosome Location	chr7:129357298-129357299
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:129356894..129359708-chr7:129468189..129470205,2	K562	blood:
2	chr7:129354570..129358914-chr7:129360217..129362870,6	K562	blood:
3	chr7:129351836..129354088-chr7:129355312..129358285,2	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10954245	0.83[ASN][1000 genomes]
rs10954248	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10954251	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11557288	0.85[ASN][1000 genomes]
rs11570363	0.83[ASN][1000 genomes]
rs11760589	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11761434	0.96[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11769146	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11773023	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.98[TSI][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11975979	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12154342	0.87[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13225629	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13226276	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13230677	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13231538	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13236221	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13239011	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13244638	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs17556221	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.95[TSI][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17556430	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1962038	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1984823	0.81[CEU][hapmap];0.93[GIH][hapmap]
rs2402967	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2402975	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34498715	0.83[ASN][1000 genomes]
rs36033773	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs36083190	0.83[ASN][1000 genomes]
rs3736626	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.98[TSI][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3800599	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4440554	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4728175	0.81[CEU][hapmap];0.91[GIH][hapmap]
rs4731615	0.83[CEU][hapmap]
rs6953987	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.89[TSI][hapmap];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6959550	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6975927	0.83[ASN][1000 genomes]
rs6976516	0.83[ASN][1000 genomes]
rs73159640	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9649538	0.88[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2293629	UBE2H	cis	cerebellum	SCAN

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:129315600-129373600	Weak transcription	Psoas Muscle	Psoas
2	chr7:129319000-129380000	Weak transcription	NHDF-Ad	bronchial
3	chr7:129328000-129369000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr7:129337600-129359200	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr7:129339200-129381800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr7:129342800-129360200	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr7:129342800-129367000	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr7:129343200-129379600	Weak transcription	Stomach Mucosa	stomach
9	chr7:129343400-129361200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr7:129345800-129359200	Strong transcription	Fetal Thymus	thymus
11	chr7:129346800-129372400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr7:129347000-129360200	Strong transcription	Primary B cells from peripheral blood	blood
13	chr7:129348200-129375600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr7:129348200-129392000	Strong transcription	Primary T helper cells fromperipheralblood	blood
15	chr7:129348400-129372400	Strong transcription	Primary T helper cells PMA-I stimulated	--
16	chr7:129348400-129372400	Strong transcription	Dnd41	blood
17	chr7:129348600-129360600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr7:129348600-129360600	Strong transcription	Duodenum Mucosa	Duodenum
19	chr7:129348600-129360600	Strong transcription	Rectal Mucosa Donor 29	rectum
20	chr7:129348600-129360800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
21	chr7:129348600-129361200	Strong transcription	HUES48 Cell Line	embryonic stem cell
22	chr7:129348600-129372400	Strong transcription	HUES6 Cell Line	embryonic stem cell
23	chr7:129348600-129372600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
24	chr7:129348600-129375200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr7:129348600-129375800	Strong transcription	Primary T cells fromperipheralblood	blood
26	chr7:129348800-129358400	Strong transcription	Skeletal Muscle Male	skeletal muscle
27	chr7:129348800-129359400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
28	chr7:129348800-129359400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr7:129348800-129359400	Strong transcription	Fetal Intestine Small	intestine
30	chr7:129348800-129360600	Strong transcription	Primary T cells from cord blood	blood
31	chr7:129348800-129360600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr7:129348800-129360600	Strong transcription	Fetal Muscle Trunk	muscle
33	chr7:129348800-129361400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr7:129349000-129360600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr7:129349000-129361200	Strong transcription	HUES64 Cell Line	embryonic stem cell
36	chr7:129349400-129359600	Strong transcription	Primary B cells from cord blood	blood
37	chr7:129350000-129358000	Strong transcription	Brain Hippocampus Middle	brain
38	chr7:129350200-129360200	Strong transcription	Cortex derived primary cultured neurospheres	brain
39	chr7:129351600-129394800	Weak transcription	Hela-S3	cervix
40	chr7:129352600-129367000	Weak transcription	Colonic Mucosa	Colon
41	chr7:129352600-129371200	Weak transcription	HMEC	breast
42	chr7:129352800-129363800	Weak transcription	HUVEC	blood vessel
43	chr7:129353800-129367000	Weak transcription	Gastric	stomach
44	chr7:129354400-129360600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr7:129354800-129368400	Weak transcription	Fetal Heart	heart
46	chr7:129355000-129357800	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr7:129355000-129364200	Weak transcription	HSMMtube	muscle
48	chr7:129355200-129357600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
49	chr7:129355200-129359400	Weak transcription	HepG2	liver
50	chr7:129355200-129380600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links