Variant report

Variant	rs2402975
Chromosome Location	chr7:129334546-129334547
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:129333332..129335548-chr7:129335980..129339613,4	K562	blood:
2	chr7:129329549..129331760-chr7:129332227..129334813,2	MCF-7	breast:
3	chr7:129328277..129329928-chr7:129333290..129335643,2	K562	blood:
4	chr7:129331995..129334555-chr7:129422124..129425083,2	K562	blood:
5	chr7:129332279..129335548-chr7:129335569..129339613,4	K562	blood:

Variant related genes	Relation type
ENSG00000242078	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10954245	0.87[ASN][1000 genomes]
rs10954248	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10954251	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11557288	0.81[ASN][1000 genomes]
rs11570363	0.87[ASN][1000 genomes]
rs11760589	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11761434	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11769146	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11773023	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11975979	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12154342	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12154677	0.81[ASN][1000 genomes]
rs13225629	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13226276	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13230677	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13231538	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13236221	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13239011	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13244638	0.87[ASN][1000 genomes]
rs17556221	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17556430	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1962038	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2293629	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2402967	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34498715	0.87[ASN][1000 genomes]
rs36033773	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs36083190	0.87[ASN][1000 genomes]
rs3736626	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3800599	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4440554	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6953987	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6959550	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6975927	0.87[ASN][1000 genomes]
rs6976516	0.87[ASN][1000 genomes]
rs73159640	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:129297800-129349800	Weak transcription	Small Intestine	intestine
2	chr7:129305000-129338200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr7:129307200-129352000	Weak transcription	NHLF	lung
4	chr7:129311400-129352200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr7:129314800-129351200	Weak transcription	Pancreas	Pancrea
6	chr7:129315200-129341800	Weak transcription	NH-A	brain
7	chr7:129315400-129357000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr7:129315600-129373600	Weak transcription	Psoas Muscle	Psoas
9	chr7:129316400-129350200	Weak transcription	Brain Germinal Matrix	brain
10	chr7:129316400-129357200	Weak transcription	Fetal Brain Male	brain
11	chr7:129317600-129338400	Weak transcription	K562	blood
12	chr7:129317800-129338400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr7:129317800-129338400	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr7:129319000-129347000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr7:129319000-129380000	Weak transcription	NHDF-Ad	bronchial
16	chr7:129319200-129351200	Weak transcription	Hela-S3	cervix
17	chr7:129320600-129350200	Weak transcription	Fetal Kidney	kidney
18	chr7:129325000-129350000	Weak transcription	Brain Substantia Nigra	brain
19	chr7:129328000-129334600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr7:129328000-129369000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr7:129328200-129335600	Strong transcription	Primary T helper cells fromperipheralblood	blood
22	chr7:129328800-129335400	Strong transcription	Primary T cells fromperipheralblood	blood
23	chr7:129329000-129335000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
24	chr7:129329200-129334800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
25	chr7:129329200-129334800	Strong transcription	Primary monocytes fromperipheralblood	blood
26	chr7:129329200-129334800	Strong transcription	Primary B cells from peripheral blood	blood
27	chr7:129329200-129334800	Strong transcription	Duodenum Mucosa	Duodenum
28	chr7:129329200-129335000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr7:129329200-129335000	Strong transcription	Primary T cells from cord blood	blood
30	chr7:129329200-129335200	Strong transcription	Monocytes-CD14+_RO01746	blood
31	chr7:129329200-129335600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr7:129329400-129334600	Strong transcription	Fetal Intestine Large	intestine
33	chr7:129329400-129334800	Strong transcription	Duodenum Smooth Muscle	Duodenum
34	chr7:129329400-129334800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr7:129329600-129334600	Strong transcription	Fetal Stomach	stomach
36	chr7:129329600-129335400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr7:129329800-129334600	Strong transcription	Fetal Intestine Small	intestine
38	chr7:129330000-129335200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr7:129330000-129336800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr7:129330200-129334800	Strong transcription	Rectal Mucosa Donor 29	rectum
41	chr7:129330200-129335000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr7:129330200-129335000	Strong transcription	Liver	Liver
43	chr7:129330600-129338400	Weak transcription	Brain Cingulate Gyrus	brain
44	chr7:129330600-129338800	Weak transcription	HMEC	breast
45	chr7:129330800-129338400	Weak transcription	H1 Cell Line	embryonic stem cell
46	chr7:129331400-129334800	Strong transcription	HUES64 Cell Line	embryonic stem cell
47	chr7:129331400-129334800	Strong transcription	Skeletal Muscle Female	skeletal muscle
48	chr7:129331400-129335000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
49	chr7:129332000-129341400	Weak transcription	HepG2	liver
50	chr7:129332000-129341800	Weak transcription	Osteobl	bone

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