Variant report

No.	Distal block	Cell Line	Cell type
1	chr7:129222217..129223241-chr7:129275153..129276108,4	MCF-7	breast:
2	chr7:129222342..129223170-chr7:129469917..129470749,2	MCF-7	breast:
3	chr7:129222603..129223338-chr7:129247300..129248206,3	MCF-7	breast:
4	chr7:129222358..129223166-chr7:129284165..129284686,2	MCF-7	breast:
5	chr7:129212812..129216194-chr7:129221295..129224141,3	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10954245	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10954248	0.88[ASN][1000 genomes]
rs10954251	0.88[ASN][1000 genomes]
rs11570363	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11760589	0.88[ASN][1000 genomes]
rs11761434	0.87[ASN][1000 genomes]
rs11769146	0.87[ASN][1000 genomes]
rs11769676	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11773023	0.87[ASN][1000 genomes]
rs11975979	0.88[ASN][1000 genomes]
rs12154342	0.83[ASN][1000 genomes]
rs12154677	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13225629	0.87[ASN][1000 genomes]
rs13226276	0.85[ASN][1000 genomes]
rs13230677	0.87[ASN][1000 genomes]
rs13231538	0.86[ASN][1000 genomes]
rs13236221	0.88[ASN][1000 genomes]
rs13244638	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17556221	0.88[ASN][1000 genomes]
rs17556430	0.87[ASN][1000 genomes]
rs1962038	0.87[ASN][1000 genomes]
rs2293629	0.83[ASN][1000 genomes]
rs2402967	0.88[ASN][1000 genomes]
rs2402975	0.87[ASN][1000 genomes]
rs34038233	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34498715	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36017781	0.81[EUR][1000 genomes]
rs36033773	0.88[ASN][1000 genomes]
rs3736626	0.87[ASN][1000 genomes]
rs3800599	0.87[ASN][1000 genomes]
rs6953987	0.88[ASN][1000 genomes]
rs6959550	0.82[ASN][1000 genomes]
rs6975927	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6976516	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831128	chr7:129063040-129240800	Weak transcription Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:129219000-129223400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr7:129219200-129227600	Weak transcription	HSMMtube	muscle

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