Variant report

Variant	rs13225629
Chromosome Location	chr7:129320602-129320603
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:129318841..129320791-chr7:129419884..129421413,2	MCF-7	breast:
2	chr7:129309215..129312149-chr7:129318307..129320858,2	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10954245	0.87[ASN][1000 genomes]
rs10954248	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10954251	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11570363	0.87[ASN][1000 genomes]
rs11760589	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11761434	0.91[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11769146	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11773023	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11975979	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12154342	0.91[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12154677	0.81[ASN][1000 genomes]
rs13226276	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13230677	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13231538	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13236221	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13239011	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13244638	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs17556221	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17556430	0.95[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1962038	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2293629	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2402967	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2402975	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34498715	0.87[ASN][1000 genomes]
rs36033773	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs36083190	0.87[ASN][1000 genomes]
rs3736626	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3800599	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4440554	0.95[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6953987	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6959550	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6975927	0.87[ASN][1000 genomes]
rs6976516	0.87[ASN][1000 genomes]
rs73159640	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9649538	0.86[CHB][hapmap];1.00[JPT][hapmap]

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:129283800-129331600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr7:129290000-129325800	Weak transcription	Stomach Mucosa	stomach
3	chr7:129297800-129349800	Weak transcription	Small Intestine	intestine
4	chr7:129301000-129330200	Weak transcription	Gastric	stomach
5	chr7:129302000-129331800	Weak transcription	Esophagus	oesophagus
6	chr7:129305000-129338200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr7:129307200-129352000	Weak transcription	NHLF	lung
8	chr7:129311200-129322600	Strong transcription	Fetal Thymus	thymus
9	chr7:129311400-129323800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr7:129311400-129352200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr7:129313000-129330200	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr7:129313200-129321400	Strong transcription	Monocytes-CD14+_RO01746	blood
13	chr7:129314400-129330200	Weak transcription	Right Ventricle	heart
14	chr7:129314600-129329800	Weak transcription	Spleen	Spleen
15	chr7:129314800-129321200	Strong transcription	Primary monocytes fromperipheralblood	blood
16	chr7:129314800-129330200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr7:129314800-129351200	Weak transcription	Pancreas	Pancrea
18	chr7:129315000-129331400	Weak transcription	Colonic Mucosa	Colon
19	chr7:129315200-129329200	Weak transcription	NHEK	skin
20	chr7:129315200-129330200	Weak transcription	Brain Angular Gyrus	brain
21	chr7:129315200-129330200	Weak transcription	Rectal Smooth Muscle	rectum
22	chr7:129315200-129341800	Weak transcription	NH-A	brain
23	chr7:129315400-129331600	Weak transcription	HSMM	muscle
24	chr7:129315400-129357000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr7:129315600-129321400	Strong transcription	Dnd41	blood
26	chr7:129315600-129324600	Weak transcription	HUVEC	blood vessel
27	chr7:129315600-129330200	Weak transcription	Osteobl	bone
28	chr7:129315600-129331600	Weak transcription	Brain Anterior Caudate	brain
29	chr7:129315600-129331600	Weak transcription	HSMMtube	muscle
30	chr7:129315600-129373600	Weak transcription	Psoas Muscle	Psoas
31	chr7:129315800-129324600	Weak transcription	Brain Substantia Nigra	brain
32	chr7:129316000-129324600	Weak transcription	Brain Cingulate Gyrus	brain
33	chr7:129316000-129330000	Weak transcription	Fetal Muscle Trunk	muscle
34	chr7:129316000-129330200	Weak transcription	Brain Hippocampus Middle	brain
35	chr7:129316000-129331400	Weak transcription	Colon Smooth Muscle	Colon
36	chr7:129316000-129331600	Weak transcription	GM12878-XiMat	blood
37	chr7:129316200-129321800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr7:129316200-129329200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr7:129316200-129329400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr7:129316200-129330000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr7:129316200-129330200	Weak transcription	Placenta Amnion	Placenta Amnion
42	chr7:129316200-129330200	Weak transcription	Skeletal Muscle Male	skeletal muscle
43	chr7:129316400-129324600	Weak transcription	Fetal Muscle Leg	muscle
44	chr7:129316400-129324800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr7:129316400-129329000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr7:129316400-129329400	Weak transcription	Fetal Intestine Large	intestine
47	chr7:129316400-129330000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr7:129316400-129330200	Weak transcription	Fetal Brain Female	brain
49	chr7:129316400-129331400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
50	chr7:129316400-129350200	Weak transcription	Brain Germinal Matrix	brain

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